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Search results for julia bioinformatics
bioinformatics
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julia
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55 search results found
Dash
⭐
19,976
Data Apps & Dashboards for Python. No JavaScript Required.
Dash.jl
⭐
475
Dash for Julia - A Julia interface to the Dash ecosystem for creating analytic web applications in Julia. No JavaScript required.
Bio.jl
⭐
256
[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia
Biosequences.jl
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141
Biological sequences for the julia language
Biostructures.jl
⭐
77
A Julia package to read, write and manipulate macromolecular structures (particularly proteins)
Pangraph
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72
A bioinformatic toolkit to align genome assemblies into pangenome graphs
Geneticsmakie.jl
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66
🧬High-performance genetics- and genomics-related data visualization using Makie.jl
Mitos.jl
⭐
64
Mutual Information Tools for protein Sequence analysis in Julia
Opengene.jl
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61
(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia
Lynnlangit
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59
Lynn Langit profile
Flashweave.jl
⭐
52
Inference of microbial interaction networks from large-scale heterogeneous abundance data
Bioalignments.jl
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51
Sequence alignment tools
Pipelines.jl
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39
A lightweight and powerful Julia package for computational pipelines and workflows.
Geneticvariation.jl
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33
Datastructures and algorithms for working with genetic variation
Bio3dview.jl
⭐
32
A Julia package to view macromolecular structures in the REPL, in a Jupyter notebook/JupyterLab or in Pluto
Genomegraphs.jl
⭐
29
A modern genomics framework for julia
Biosymbols.jl
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28
Nucleic and amino acid primitive types
Xam.jl
⭐
24
Parse and process SAM and BAM formatted files
Fusiondirect.jl
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23
(No maintenance) Detect gene fusion directly from raw fastq files
Seqmaker.jl
⭐
19
(No maintenance) Next Generation Sequencing Simulation with SNP, Variation and Sequencing Error Integrated
Catt
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18
An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.
Gaussdca.jl
⭐
18
Multivariate Gaussian Direct Coupling Analysis for residue contact prediction in protein families - Julia module
Substitutionmodels.jl
⭐
16
Biological Sequence Substitution Models for Julia
Genomicmaps.jl
⭐
13
Julia package for visualising genomic data
Bioinformatics Conf Vids
⭐
13
List of conferences with talk videos posted online
Phylotrees.jl
⭐
13
Phylogenetic trees in Julia
Bgzfstreams.jl
⭐
12
BGZF Stream
Genefinder.jl
⭐
12
A Gene Finder framework for Julia.
Fastaio.jl
⭐
11
Utilities to read/write FASTA format files in Julia
Biocore.jl
⭐
11
Core types and interfaces for BioJulia packages
Genomicannotations.jl
⭐
11
Biograph.jl
⭐
10
A Julia package for handle genome graph in the GFA format.
Taxonomy.jl
⭐
10
Julia package to handle the NCBI Taxonomy database.
Whale.jl
⭐
10
Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation
Readdatastores.jl
⭐
10
Datastores for reads, not your papa's FASTQ files.
Seqshuffle.jl
⭐
9
Shuffle the string sequences such that the k-mer frequency is preserved in each string
Cellscopes.jl
⭐
9
A Julia package for single cell and spatial data analysis
Newicktree.jl
⭐
8
Newick formatted (phylogenetic) trees
Julia Theosysbio
⭐
8
Biomolecularstructures.jl
⭐
8
The BiomolecularStructures package provides several Bioinformatics-related modules for Julia.
Variantcallformat.jl
⭐
8
Read and write VCF and BCF files
Bioscripts
⭐
8
Cool Bioinformatics Scripts
Normalizequantiles.jl
⭐
7
NormalizeQuantiles.jl implements quantile normalization
Gff3.jl
⭐
7
Mmtf.jl
⭐
7
A julia package to parse and write MMTF file
Metaphylo.jl
⭐
7
Phylogenetic trees with metadata by Julia based on Graphs.jl and AbstractTrees.jl.
Phylogenies.jl
⭐
6
The BioJulia package for working with phylogenetic trees and geneologies.
Motifs.jl
⭐
6
DNA Motif discovery that includes the discovery of flexible (long or gapped) motifs.
Burrowswheeleraligner.jl
⭐
5
Binding for bwa
Simplebio.jl
⭐
5
Easy-to-use biological sequence tools working with DNA, RNA and aminoacid sequences.
Biorecordsprocessing.jl
⭐
5
Process your biological records with ease
Bio Bin
⭐
5
Handy reusable bioinformatic scripts
Microbiomeanalysis.jl
⭐
5
Functions and workflows for the analysis of microbiome data.
Biomarkovchains.jl
⭐
5
Representing biological sequences as Markov chains
Admixture.jl
⭐
5
Julia wrapper of the ADMIXTURE program for estimating ancestry
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1-55 of 55 search results
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