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Search results for java proteomics

23 search results found

Fragpipe ⭐ 149

A cross-platform Graphical User Interface (GUI) for running MSFragger and Philosopher - powered pipeline for comprehensive analysis of shotgun proteomics data

Peptide Shaker ⭐ 41

Interpretation of proteomics identification results

Searchgui ⭐ 36

Highly adaptable common interface for proteomics search and de novo engines

PDV: an integrative proteomics data viewer

Babelomics ⭐ 31

EzAAI - High Throughput Prokaryotic AAI Calculator

mzTab Reporting MS-based Proteomics and Metabolomics Results

Causalpath ⭐ 27

A project for exploring differentially active signaling paths related to proteomics datasets

Compomics Utilities ⭐ 26

Open source Java library for computational proteomics

📚 🔬 PIA - Protein Inference Algorithms

Thermorawfileparsergui ⭐ 17

Graphical user interface for the ThermoRawFileParser

Pride Inspector ⭐ 15

PRIDE Inspector is a Java desktop application to visualise and Quality Assessment on Mass Spectrometry data and Proteomics

BACNET is a Java based platform to develop website for multi-omics analysis

Ms Data Core Api ⭐ 10

Open-source java library to handle different file format standards for proteomics. Specially ms-data-core-api is good for MetaData representation.

MzidLib - A library of routines for manipulating data in the PSI's mzIdentML standard.

Jsparklines ⭐ 8

Sparklines for java tables

Spectrum_similarity ⭐ 5

Scoring functions to compare MS/MS spectra

Platform for Distributed Proteomics Software

Proteinclusterquant ⭐ 5

Protein Cluster Quant is a Java software for the analysis of complex proteomics samples (quantitative or not). It helps to reduce the redundancy of the peptide-to-protein relationship and to visualize the results in a bipartite network (Cytoscape).

Dia Umpire ⭐ 5

Computational analysis for mass spectrometry-based proteomics data

Panelomix ⭐ 5

PanelomiX - the R package to create panels, combinations of biomarkers

PTM-Invariant Peptide Identification. An open search tool.

Denovogui ⭐ 5

Graphical user interface for de novo sequencing of tandem mass spectra

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