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Search results for java biology

24 search results found

Jvarkit ⭐ 440

Java utilities for Bioinformatics

Intermine ⭐ 228

A powerful open source data warehouse system

Cloud Pipeline ⭐ 137

Cloud agnostic genomics analysis, scientific computation and storage platform

Globalbioticinteractions ⭐ 114

Global Biotic Interactions provides access to existing species interaction datasets

Cellbase ⭐ 84

High-Performance NoSQL database and RESTful web services to access to most relevant biological data

Computational synthetic biology: Predicting DNA edits for bioengineering

Caleydo - Visualization for Molecular Biology

iBioSim is a computer-aided design (CAD) tool aimed for the modeling, analysis, and design of genetic circuits. It is capable of importing and exporting models specified using the Systems Biology Markup Language (SBML). iBioSim also supports the Synthetic Biology Open Language (SBOL), an emerging standard for information exchange in synthetic biology.

Libsbolj ⭐ 33

Java Library for Synthetic Biology Open Language (SBOL)

Cellular Automata Simulator

The Systems Biology Simulation Core Library (SBSCL) provides an efficient and exhaustive Java implementation of methods to interpret the content of models encoded in the Systems Biology Markup Language (SBML) and its numerical solution.

Simulations for population biology and evolutionary ecology

Nested Sampling ⭐ 10

Nested sampling packagin for BEAST

Curvetracing ⭐ 9

Libraries for the Systems Biology Graphical Notation (SBGN); Java and C++

Bgee_pipeline ⭐ 8

Source code of the Bgee pipeline used to build the Bgee database

Programming and numeric computing platform for math modeling and visualization with fully functional programming language

Android Application - Biology Quiz

Agent-based modelling tool for bacterial populations in systems and synthetic biology

Clothobiofabedition ⭐ 7

Synthetic Biology Computer-Aided Design tool

Libsbolj3 ⭐ 6

A Java library for the Synthetic Biology Open Language version 3

Bactman Adventures ⭐ 5

Follow BactMan in his adventures to discover science with fun mini-games!

Clotho3crud ⭐ 5

Evanalyzer ⭐ 5

EV analyzing plugin for Fiji

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