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A Python toolbox/library for reality-centric machine learning/deep learning on partially-observed time series with PyTorch, including SOTA models supporting tasks of imputation, classification, clustering, and forecasting on incomplete (irregularly-sampled) multivariate time series with NaN missing values/data. https://arxiv.org/abs/2305.18811

Datawig ⭐ 434

Imputation of missing values in tables.

Multivariate Imputation by Chained Equations

Impyute ⭐ 293

Data imputations library to preprocess datasets with missing data

The official PyTorch implementation of the paper "SAITS: Self-Attention-based Imputation for Time Series". A fast and state-of-the-art (SOTA) model with efficiency for time series imputation (imputing multivariate incomplete time series containing missing data/values). https://arxiv.org/abs/2202.08516

Isotree ⭐ 169

(Python, R, C/C++) Isolation Forest and variations such as SCiForest and EIF, with some additions (outlier detection + similarity + NA imputation)

Imputets ⭐ 143

CRAN R Package: Time Series Missing Value Imputation

Handyspark ⭐ 129

HandySpark - bringing pandas-like capabilities to Spark dataframes

Gwas_scripts ⭐ 127

Codebook from my GWAS cookbook

Single (i) Cell R package (iCellR) is an interactive R package to work with high-throughput single cell sequencing technologies (i.e scRNA-seq, scVDJ-seq, scATAC-seq, CITE-Seq and Spatial Transcriptomics (ST)).

Time Series Data Beans: a Python toolbox loads 169 public time-series datasets for machine learning/deep learning with a single line of code.

Impute Me ⭐ 92

This is the code behind the www.impute.me site. It contains algorithms for personal genome analysis, including imputation and polygenic risk score calculation

Race and ethnicity Imputation from Disease history with Deep LEarning

Simputation ⭐ 88

Making imputation easy

Hyperimpute ⭐ 85

A framework for prototyping and benchmarking imputation methods

Betaml.jl ⭐ 83

Beta Machine Learning Toolkit

Imputationserver ⭐ 66

Michigan Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves user experience and productivity

Scimpute ⭐ 58

Accurate and robust imputation of scRNA-seq data

Radiator ⭐ 53

RADseq Data Exploration, Manipulation and Visualization using R

Missranger ⭐ 53

R package "missRanger" for fast imputation of missing values by random forests.

Imputation method for scRNA-seq based on low-rank approximation

A nextflow pipeline to perform state-of-the-art genome-wide association studies.

Streamline ⭐ 47

Simple Transparent End-To-End Automated Machine Learning Pipeline for Supervised Learning in Tabular Binary Classification Data

sciblox - Easier Data Science and Machine Learning

Code for the paper "Filling the G_ap_s: Multivariate Time Series Imputation by Graph Neural Networks"

Brewpots ⭐ 30

The tutorials for PyPOTS.

Totalleastsquares.jl ⭐ 27

Solve many kinds of least-squares and matrix-recovery problems

A tidyverse suite for (pre-) machine-learning: cluster, PCA, permute, impute, rotate, redundancy, triangular, smart-subset, abundant and variable features.

Joint Analysis and Imputation of generalized linear models and linear mixed models with missing values

Tools for multiple imputation in multilevel modeling

A random-forest-based approach for imputing clustered incomplete data

R package – HLA Genotype Imputation with Attribute Bagging (development version only)

mlim: single and multiple imputation with automated machine learning

Ssim_seq2seq ⭐ 19

SSIM - A Deep Learning Approach for Recovering Missing Time Series Sensor Data

Official repository for the paper "Learning to Reconstruct Missing Data from Spatiotemporal Graphs with Sparse Observations" (NeurIPS 2022)

Automatic Time Series Forecasting and Missing Values Imputation

Micefast ⭐ 15

R enviroment - fast imputations 🐉

Automated Data Preprocessing ⭐ 14

A command-line utility program for automating the trivial, frequently occurring data preparation tasks: missing value interpolation, outlier removal, and encoding categorical variables.

Pygrinder ⭐ 14

PyGrinder grinds data beans into the incomplete by introducing missing values with different missing patterns.

Misscompare ⭐ 13

missCompare R package - intuitive missing data imputation framework

Introduction_to_gwas ⭐ 11

https://filippob.github.io/introduction_to_gwas/

Chipimputation ⭐ 11

Genotype Imputation Pipeline for H3Africa

Bayesian Clustering and Imputation of Single Cell Methylomes

GWAS QC, PCA, haplotype phasing, genotype imputation

Missingdata ⭐ 9

missing data handing: visualize and impute

Quantified Sleep ⭐ 9

Quantified Sleep: Machine learning techniques for observational n-of-1 studies.

a package for missing data handling via multiple imputation by chained equations in Julia. It is heavily based on the R package {mice} by Stef van Buuren, Karin Groothuis-Oudshoorn and collaborators.

R package to impute methylation within WGBS using machine learning

An efficient genetic data imputation pipeline

Nhanes R Programming ⭐ 9

This repository should help people that would like to code in R and work with the National Health and Nutrition Examination Survey (NHANES). Some topics corved are SQL , logistic regression.... etc

Mida Pytorch ⭐ 8

A pytorch implementation of "MIDA: Multiple Imputation using Denoising Autoencoders"

psfmi: Predictor Selection Functions for Logistic and Cox regression models in multiply imputed datasets

Hesseflux ⭐ 8

hesseflux provides functions used in the processing and post-processing of the Eddy covariance flux data of the ICOS ecosystem site FR-Hes.

Provides functions to impute missing values using Gaussian copulas for mixed data types.

Brits Tensorflow ⭐ 8

TensorFlow implementation of BRITS model for multivariate time series imputation with bidirectional recurrent neural networks.

A database with automatic dynamic imputation of missing values.

A highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning.

Imputation_beagle_tutorial ⭐ 7

Imputation-beagle-tutorial

Joint variational Autoencoders for Multimodal Imputation and Embedding (JAMIE)

Phimtools ⭐ 6

A phasing and imputation pipeline for NGS data

Dosageconvertor ⭐ 6

DosageConvertor is a C++ tool to convert dosage files (in VCF format) from Minimac3/4 to other formats such as MaCH or PLINK.

Automated imputation pipeline for arbitrary dataset and reference panels.

Shinymice ⭐ 5

{shinymice} is an R package for interactive evaluation of incomplete data by Hanne Oberman, guided by Gerko Vink and Stef van Buuren.

Imputerobust ⭐ 5

Multiple Imputation with GAMLSS

Machine_learning_hackathons ⭐ 5

Machine learning and Deep Learning Hackathon Solutions

This capstone project aims to utilize machine learning to predict the earning power of a room rented out on Airbnb.

1-67 of 67 search results

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