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Search results for imagej macro

27 search results found

Imagej Tutorial ⭐ 51

Supplementary for my ImageJ Tutorial

Training Resources ⭐ 38

Resources for teaching/preparing to teach bioimage analysis

Thermimagej ⭐ 31

ImageJ functions and macros for working with thermal image files

Imagej_macros_and_scripts ⭐ 26

ImageJ macros and scripts written at the imaging facility MRI

Fiji pipeline for automated serial section reconstruction and mouse brain analysis.

Clij Docs ⭐ 22

Online documentation and reference for CLIJ

Visualization_toolset ⭐ 17

Imagej toolset to ease hyperstacks visualization and handling

Imagej Macros ⭐ 16

Macros for ImageJ/FIJI

Em Scalebartools ⭐ 11

Fiji/ImageJ macros to quickly add a scale bar to an (electron microscopy) image.

Cellcounting ⭐ 10

Two ImageJ plugins to count mammalian cells in the pictures of cell suspension in a standard hemocytometer.

Imagej macro to calculate the MTF based on a knife edge measurement

IRimage: Open source software for processing images from consumer thermal cameras

Mosaicexplorerj ⭐ 8

An ImageJ script to align and stitch three-dimensional tiles and quickly explore terabyte-sized microscopy datasets

Zfvascularquantification ⭐ 8

#ZVQ - Zebrafish Vascular Quantification - https://doi.org/10.1242/dev.199720

Mitochondria Analyzer ⭐ 8

Mitochondria Analyzer

Dispimfusion ⭐ 7

A package for processing diSPIM images with GPU implementation

Slice2volume ⭐ 7

Script that registers Histology slices to volumetric image data

Bioimager ⭐ 6

A .NET microscopy imaging application based on Bio library. Supports various microscopes by using imported libraries & GUI automation. Supports XInput game controllers to move stage, take images, run ImageJ macros on images or Bio C# scripts.

Omero_macro Extensions ⭐ 6

Trabecular_segmentation_avizo ⭐ 6

Method for automatically segmenting trabecular and cortical bone in CT scans, using Avizo.

Radialitymap ⭐ 5

Splitting image to radial and non-radial components ImageJ macro

Imagej Fiji Level 2 Course ⭐ 5

Materials for the "ImageJ/Fiji Level 2: Automation and batch processing using macros" course taught at the Wolfson Bioimaging Facility, University of Bristol.

Teaching Imagej Fiji ⭐ 5

ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing

Foci Analyzer ⭐ 5

ImageJ macro for the analysis of foci (e.g. DNA damage) in nuclei/cells

Process_images ⭐ 5

ImageJ macros: batch process microscopy images into quantification and visualization stacks

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