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Search results for imagej
imagej
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46 search results found
Imagepy
⭐
1,179
Image process framework based on plugin like imagej, it is esay to glue with scipy.ndimage, scikit-image, opencv, simpleitk, mayavi...and any libraries based on numpy
Qupath
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934
QuPath - Bioimage analysis & digital pathology
Tifffile
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436
Read and write TIFF files. Forked from https://pypi.org/project/tifffile
Morpholibj
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95
Collection of mathematical morphology methods and plugins for ImageJ
Awesome Biological Image Analysis
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74
A curated list of software, tools, pipelines, plugins etc. for image analysis related to biological questions.
Imagej.js
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70
ImageJS--Image analysis in the browser with ImageJ
Sciview
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59
sciview is a tool for visualization and interaction with ND image and mesh data
Knip
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47
KNIME Image Processing Extension
Roifile
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46
Read and write ImageJ ROI format. Forked from https://pypi.org/project/roifile
Thermimagej
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31
ImageJ functions and macros for working with thermal image files
Imagej_macros_and_scripts
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26
ImageJ macros and scripts written at the imaging facility MRI
Edge Detection Project
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25
Tiny Image in Javascript - Edge Detection Algorithms
Opencv Rolling Ball
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23
Fully Ported to Python from ImageJ's Background Subtractor. Rolling ball and sliding paraboloid background subtraction algorithms.
Flika
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20
An interactive image processing program for biologists written in Python.
Napari Imagej
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20
Use ImageJ functionality from napari
Bonej2
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19
Plugins for bone image analysis
Zstackdepthcolorcode
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19
Z-stack Depth Colorcode ImageJ FIJI plugin
Scripts
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18
🔬🍸 Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ
Ijtiff
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18
An R Package for general purpose TIFF file I/O which plays nice with ImageJ
Ijp Color
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17
Plugins for ImageJ - color space conversions and color calibration
Imagej Macros
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16
Macros for ImageJ/FIJI
Snt
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15
The ImageJ framework for semi-automated tracing and analysis of neurons
Color Blind Luts
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15
Color blind friendly lookup tables for Fiji/ImageJ
Imagingbook Calibrate
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14
Java/ImageJ implementation of Zhang's camera calibration method
Mia
⭐
11
Modular, object-based analysis for ImageJ/Fiji
Em Scalebartools
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11
Fiji/ImageJ macros to quickly add a scale bar to an (electron microscopy) image.
Imagingbook Public
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11
Image processing software for textbooks by W. Burger & M. Burge
Ijp Toolkit
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11
ijp-toolkit general purpose plugins for ImageJ (also known as ij-plugins_toolkit)
Dom_utrecht
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11
Detection of Molecules plugin for ImageJ, Utrecht University
Ij Nl Means
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10
Non local means filter for ImageJ
Fijirelax
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9
FijiRelax: 3D+t multi-echo spin-echo sequences MRI analysis
Asi_mtf
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9
Imagej macro to calculate the MTF based on a knife edge measurement
Maskflow Fiji
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8
A Fiji plugin for object detection and tracking based on MaskRCNN.
Xitosbml
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7
XitoSBML - the spatial SBML plugin for ImageJ
Sass
⭐
6
Toolkit for simulating real-time control systems for super-resolution microscopy.
Bioimager
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6
A .NET microscopy imaging application based on Bio library. Supports various microscopes by using imported libraries & GUI automation. Supports XInput game controllers to move stage, take images, run ImageJ macros on images or Bio C# scripts.
Biogtk
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6
A cross platform version of Bio library & program. Bio is a library & program for annotating, & editing various microscopy imaging formats using Bioformats supported images. including whole slide, pyramidal & series.
Quantify Intensity From Timelapse
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6
Step-by-step instruction to quantify fluorescence intensities from timelapse imaging experiments
Omero_macro Extensions
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6
Sbt Imagej
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6
sbt-imagej is an SBT (Simmple Build Tool) plugin that that helps with development of ImageJ plugins
Bio
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6
A .NET library & program for annotating, & editing various microscopy imaging formats using Bioformats supported images. including whole slide, pyramidal & series.
Quimp
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6
QuimP is software for tracking cellular shape changes and dynamic distributions of fluorescent reporters at the cell membrane.
Apr Imagej
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5
Adaptive Particle Representation (APR) support in ImageJ/Fiji
Correlescence
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5
spatial and temporal cross correlations in 1D and 2D for fluorescent microscopy (ImageJ plugin)
Xrm_reader
⭐
5
ImageJ plugin to read xrm files.
Imagej Fiji Level 2 Course
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5
Materials for the "ImageJ/Fiji Level 2: Automation and batch processing using macros" course taught at the Wolfson Bioimaging Facility, University of Bristol.
1-46 of 46 search results
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