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32 search results found

Bio_embeddings ⭐ 357

Get protein embeddings from protein sequences

Tcga_example ⭐ 135

Pb Metagenomics Tools ⭐ 127

Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics

Cblaster ⭐ 75

Find clustered hits from a BLAST search

Lfq Analyst ⭐ 27

The repo for LFQ-Analyst

Recognizer ⭐ 24

A tool for domain based annotation with databases from the Conserved Domains Database

iDeep: integrated prediction of RNA-protein binding sites using deep learning

Alignmentviewer ⭐ 15

Multiple sequence alignment visualizer

Manuscript_ab_epitope_interaction ⭐ 14

Protein_complex_maps ⭐ 13

Kdrew's scripts for handling protein complex map data

Protocol for finding informative protein families and then using them to score omic samples

Alignment-free Protein Motif Miner

Exploring Isoform-specific interactions

Analysis and Visualization of Ribosome Profiling Data

Single Cell Pipeline ⭐ 9

Foldingathome ⭐ 8

Fighting COVID-19 leveraging the FOLDING@HOME project

Kgsim Benchmark ⭐ 8

Survival Analysis for Protein-Level TCGA Analysis

Interactive Protein Sequence VIsualization/Viewer - Interactive Circos

Decrippter ⭐ 6

Genome mining tool for novel RiPP BGCs

No Read Left Behind - Software for Motif Discovery from SELEX Data

Pixelator ⭐ 6

A command-line tool and library to process and analyze sequencing data from Molecular Pixelation (MPX) assays.

A structural benchmark to measure point mutations’ impact on kinase-ligand interactions

Md_python ⭐ 6

The repository with the lecture and tutorial for CPS teaching grant

MerCat2: python code for versatile k-mer counting and diversity estimation for database independent property analysis for metaome data

Functional module detection through integration of single-cell RNA sequencing data with protein–protein interaction networks

Peptagram ⭐ 6

HTML5 interactive visualisations of proteomic experiments

Cancer_epitopes_cshl ⭐ 5

A pipeline to approximate the immunogenicity of peptides resulting from cancer mutations based on structure and other factors.

Website associated with the "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."

Ecoli_multiple_growth_conditions ⭐ 5

the mian repository for e.coli multiple growth conditions

❗ This is a read-only mirror of the CRAN R package bio3d — Biological Structure Analysis. Homepage: h

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