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Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata

Variant_catalogue_pipeline ⭐ 20

Variant catalogue pipeline

Rnaseq Nf ⭐ 20

RNAseq analysis pipeline

Docker Benchmarks ⭐ 17

A benchmarks of genomic pipelines running in Docker containers

compare sequences to a shared root reference sequence.

Modulome Workflow ⭐ 10

Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA

Rmghc 2018 ⭐ 10

Nextflow Workshop at Rocky Mountain Genomics HackCon 2018

Bacterial_wgs_training ⭐ 9

In this training course you will find theory and practice material for introducing yourself to wgs analysis for bacterial, including outbreak investigation.

NYU Langone Genome PACT (Genome Profiling of Actionable Cancer Targets) targeted exome sequencing analysis pipeline.

Speaqeasy ⭐ 6

SPEAQeasy: portable LIBD RNA-seq pipeline using Nextflow. Check http://research.libd.org/SPEAQeasy-example/ for an example on how to use this pipeline and analyze the resulting output files.

Nextflow Scif ⭐ 5

This is a demo about how to develop and deploy a pipeline using nextflow, scif, a container (Singularity and Docker) and its posterior deployment.

Nextflow_varcal ⭐ 5

Nextflow Tutorial - Variant Calling Edition

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