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13 search results found

Scikit Tda ⭐ 337

Topological Data Analysis for Python🐍

Ripser.py ⭐ 258

A Lean Persistent Homology Library for Python

Mogutda ⭐ 105

Topological Data Analysis in Python: Simplicial Complex

Distances and representations of persistence diagrams

A homology-based, computationally lightweight pipeline for discovering genes in the absence of an assembly

Ripserer.jl ⭐ 38

Flexible and efficient persistent homology computation.

Tdastats ⭐ 28

R pipeline for computing persistent homology in topological data analysis. See https://doi.org/10.21105/joss.00860 for more details.

A repackaged version of the Kenzo program by Francis Sergeraert and collaborators.

Workflow for identifying and classifying homologous gene/protein sequences

Ripser.jl ⭐ 7

Simple Ripser wrapper in Julia

Use Thor's Axe to cut exons into their evolutionary building blocks ⚡

Reciprologs ⭐ 6

Find reciprocal best hits (DIAMOND or BLAST) between two (or more!) sets of sequences.

Feature-aware orthology prediction tool. Provided data package: Quest for Orthologs reference gene sets 2019.

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1-13 of 13 search results

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