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Search results for gromacs
gromacs
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35 search results found
Colvars
⭐
167
Collective variables module for molecular simulation and analysis programs
Gmx_mmpbsa
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164
gmx_MMPBSA is a new tool based on AMBER's MMPBSA.py aiming to perform end-state free energy calculations with GROMACS files.
Acpype
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154
OFFICIAL: AnteChamber PYthon Parser interfacE
Gromacswrapper
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154
GromacsWrapper wraps system calls to GROMACS tools into thin Python classes (GROMACS 4.6.5 - 2023 supported).
Ssages
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80
Software Suite for Advanced General Ensemble Simulations
Gmxtools
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75
tools for GROMACS
Pytim
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68
a python package for the interfacial analysis of molecular simulations
Mdbenchmark
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67
Quickly generate, start and analyze benchmarks for molecular dynamics simulations.
Gro2lam
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58
Gromacs to Lammps simulation converter
Openff Interchange
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57
A project (and object) for storing, manipulating, and converting molecular mechanics data.
Votca
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40
The source of the votca-csg and xtp packages
Pycgtool
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30
Generate coarse-grained molecular dynamics models from atomistic trajectories.
Visualdynamics
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23
Web Platform made with Python and NextJS for automating GROMACS simulations
Gromacs Fda
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22
Force Distribution Analysis (FDA) for GROMACS
Mdpow
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22
Calculation of water/solvent partition coefficients with Gromacs.
Protocaller
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18
Full automation of relative protein-ligand binding free energy calculations in GROMACS
Longbow
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17
Longbow is a tool for automating simulations on a remote HPC machine. Longbow is designed to mimic the normal way an application is run locally but allows simulations to be sent to powerful machines.
Do_x3dna
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17
To analyze fluctuations in DNA or RNA structures in molecular dynamics trajectories.
Swarm Cg
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17
Swarm-CG: Automatic Parametrization of Bonded Terms in MARTINI-based Coarse-Grained Models of Simple to Complex Molecules via Fuzzy Self-Tuning Particle Swarm Optimization
Peggenerator
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17
Generate PEG topology for GROMACS and LAMMPS
Nmrformd
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16
NMRforMD is a python script for the calculation of NMR relaxation time T1 and T2 from molecular dynamics trajectory file.
Cg2at
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14
Conversion of coarsegrain to atomistic (complete rewrite of the original CG2AT)
Pytng
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13
Python bindings for TNG file format
Complexmixtures.jl
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12
Package to perform minimum-distance distribution analyses of complex solute-solvent interactions
Md Alaninedipeptide
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11
Molecular Dynamics Simulation of Alanine Dipeptide and Dihedral Angle Analysis
Paratemp
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10
A package for molecular dynamics analysis and parallel tempering in GROMACS
Clips
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9
Fast estimation of ion-pairing for screening electrolytes
Libgmxfort
⭐
8
Modern Fortran toolkit for analyzing GROMACS simulations
Gromacs On Colab
⭐
8
Google Colab notebooks for running molecular dynamics simulations with GROMACS
Libgmxcpp
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7
C++ toolkit for use in reading in and analyzing Gromacs files
Gromacstutorials.github.io
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7
Repository of the gromacstutorials webpage
Gmxanalysis
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6
For the purpose of post progressing of MD carried by gromacs
Peptidesim
⭐
5
Automated peptide simulation tool with gromacs, gromacswrapper, plumed
Gromacs Ui
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5
Dcdfort
⭐
5
Modern Fortran toolkit for reading in and analyzing DCD simulation trajectories output from LAMMPS
Related Searches
Python Gromacs (34)
Molecular Dynamics Gromacs (25)
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