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Search results for genotype likelihoods

genotype-likelihoods x

11 search results found

Radiator ⭐ 53

RADseq Data Exploration, Manipulation and Visualization using R

Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework

Glactools ⭐ 23

command-line tools for the management of genotype likelihoods and allele counts

Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝

Estimation of per-individual inbreeding coefficients under a probabilistic framework

stackr: an R package to run stacks software pipeline

Angsd Wrapper ⭐ 13

Utilities for analyzing next generation sequencing data.

Ngsf Hmm ⭐ 13

Estimation of per-individual inbreeding tracts under a probabilistic framework

Estimation of pairwise distances under a probabilistic framework

Polyploid Genotyping ⭐ 8

SNP genotyping in polyploids

Hmmploidy ⭐ 5

A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models

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