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Search results for genomics visualization

genomics-visualization x

60 search results found

Gggenomes ⭐ 518

A grammar of graphics for comparative genomics

Pycirclize ⭐ 476

Circular visualization in Python (Circos Plot, Chord Diagram)

Karyoploter ⭐ 278

karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome

Sequenceserver ⭐ 259

Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)

UCSC Genome Browser source tree. Stable branch: "beta".

Pygenomeviz ⭐ 177

A genome visualization python package for comparative genomics

Mixomics ⭐ 126

Development repository for the Bioconductor package 'mixOmics '

Igv Snapshot Automator ⭐ 122

Script to automatically create and run IGV snapshot batchscripts

igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"

Omicsplayground ⭐ 112

Visual self-service analytics platform for big omics data.

Genomic Interactive Visualization Engine ⭐ 108

Genomic Interactive Visualization Engine

Humanidiogramlibrary ⭐ 70

Resource of human chromosome schematics & images

Radiator ⭐ 53

RADseq Data Exploration, Manipulation and Visualization using R

Microbetrace ⭐ 53

The Visualization Multitool for Molecular Epidemiology and Bioinformatics

Trackhub ⭐ 47

create, manage, and upload track hubs for use in the UCSC genome browser

Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata

GenoVi, an automated customizable circular genome visualizer for bacteria and archaea

Seqcover ⭐ 38

seqcover allows user to view coverage for hundreds of genes and dozens of samples

Lollipop-diagram to interactively visualize genetic mutations

Interactive software tool for the assignment of cell types in single-cell studies.

Ezancestry ⭐ 28

Easy genetic ancestry predictions in Python

Deepstats ⭐ 27

deepStats: a stastitical toolbox for deeptools and genomic signals

Jbrowse Jupyter ⭐ 21

A python package for showing JBrowse views

Mgcplotter ⭐ 20

Microbial Genome Circular plotting tool for comparative genomics using Circos

Cfdnapro ⭐ 20

cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis

stackr: an R package to run stacks software pipeline

A pipeline to investigate horizontal gene transfer from NGS data

R Outbreak Info ⭐ 16

R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.

Genomicmaps.jl ⭐ 13

Julia package for visualising genomic data

Edgecase ⭐ 13

A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, and for haplotype inference.

Biojs Frontend ⭐ 11

Frontend repository for BioJS.

Application for semi-automated genomic annotation.

Genomics Workspace ⭐ 11

Django website project for common sequence search tools.

Divbrowse ⭐ 10

A web application for interactive visualization and exploratory data analysis of variant call matrices

Plot_genome_align_fig ⭐ 10

Plot genome alignment figure using progressiveMauve & genoPlotR

Epiviz Desktop App ⭐ 9

Desktop app for epiviz

Epiviz.gl ⭐ 8

Visualize genomic data using webgl and webworkers, in an effort to provide a fluid, high-performance user experience.

SCGV is an interactive graphical tool for single-cell genomics data, with emphasis on single-cell genomics of cancer

Gene Hints ⭐ 8

Discoverability for gene search 🧬 🔍

A suite of unique bioinformatics tools for the brave explorer.

A tutorial on structural variant calling for short read sequencing data

Karyoploter_tutorial ⭐ 8

Examples on how to use the karyoploteR R/Bioconductor package

Glue Genes ⭐ 7

glue for genomics and transcriptomics

Easy-to-use web application for visualization and comparison of genomes in Genbank file

Command line tool to plot genomic coverage from a BAM file

G3lollipop.js ⭐ 7

Lollipop-diagram to visualize genomic mutations

Circos Pipeline ⭐ 7

circos pipeline

Generator Biojs Webcomponents ⭐ 7

Generate all the boilerplate for your next BioJS tool!

A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments.

Canvasxpress Js ⭐ 6

CanvasXpress: A JavaScript Library for Data Analytics with Full Audit Trail Capabilities.

Genome Browser ⭐ 6

Genome browser to visualize and analyze genomic data

Copynumberplots ⭐ 6

R package to create plots representing copy number data using karyoploteR

Rapid processing of VCF/BCF files in R!

Python Outbreak Info ⭐ 5

Python package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info

Nft Peppers ⭐ 5

Generative Art NFTs From Genomic Data

Suite of command-line software for high-performance graphical analysis of ChIP-seq/RNA-seq/ATAC-seq data

Microbetrace ⭐ 5

The Visualization Multitool for Molecular Epidemiology and Bioinformatics

1000 Genomes Project population visualizations using dimensionality reduction

basepair bio: a single binary with many useful genomics subtools.

Cartography of Genomic Interactions Enables Deep Analysis of Single-Cell Expression Data (Nature Communications, 2023)

1-60 of 60 search results

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