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population-genetics x

13 search results found

An open-source toolkit for large-scale genomic analysis

Tools to work with variant call format files

Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model

PopPUNK 👨‍🎤 (POPulation Partitioning Using Nucleotide Kmers)

Neural Admixture ⭐ 44

Rapid population clustering with autoencoders

Get_phylomarkers ⭐ 39

A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concatenation approaches

Tomahawk ⭐ 39

Fast calculations of linkage-disequilibrium in large-scale human cohorts

Forward-time simulation in Python using fwdpp

Application of pan-genome for population

1000 Genomes Project Metadata R Package

Stormbitmaps ⭐ 11

Fast algorithms for computing XX^T for binary matrices

a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc.

Small scripts for population genetics analysis

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1-13 of 13 search results

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