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9 search results found

Enformer Pytorch ⭐ 359

Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch

Chromoformer ⭐ 24

The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)

Go_enrichment ⭐ 23

Transcripts annotation and GO enrichment Fisher tests

Fishpond ⭐ 23

Differential expression and allelic analysis, nonparametric statistics

Rnaseq Pipeline ⭐ 18

RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.

Graphsim ⭐ 16

R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)

Switchde ⭐ 15

Inference of switch-like differential expression along single-cell trajectories

Mybmonday ⭐ 10

MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional background to the #MYB_Monday tweets

BioMM: Biological-informed Multi-stage Machine learning framework for phenotype prediction using omics data

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