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Search results for genomics bioconductor

15 search results found

Mixomics ⭐ 126

Development repository for the Bioconductor package 'mixOmics '

Genomicdatacommons ⭐ 80

Provide R access to the NCI Genomic Data Commons portal.

Geoquery ⭐ 73

The bridge between the NCBI Gene Expression Omnibus and Bioconductor

Ggnomics ⭐ 69

A small project to add ggplot2 extensions

Multiassayexperiment ⭐ 67

Bioconductor package for management of multi-assay data

Spatiallibd ⭐ 53

Code for the spatialLIBD R/Bioconductor package and shiny app

Tcgaworkflow ⭐ 37

TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages

Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources

Orthogene ⭐ 31

🧬 o r t h o g e n e 🧬✨✨✨✨✨✨✨ Interspecies gene mapping✨✨✨✨✨ 🦠 🔁 🌱 🔁 🌳 🔁 🍎 🔁 🍊 🔁 🪱 🔁 🪰 🔁 🐟 🔁 🦎 🔁 🐓 🔁 🦇 🔁 🐄 🔁 🐖 🔁 🐐 🔁 🐎 🔁 🐈 🔁 🐕 🔁 🐁 🔁 🐒 🔁 🦧 🔁 🦍 🔁 🏃‍♀️

Sevenbridges R ⭐ 27

Seven Bridges API Client, CWL Schema, Meta Schema, and SDK Helper in R

Fishpond ⭐ 23

Differential expression and allelic analysis, nonparametric statistics

Nullranges ⭐ 23

Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrap samples of ranges (using the block bootstrap framework of Bickel et al 2010), or set of control ranges that are matched across one or more covariates.

Fluentgenomics ⭐ 7

plyranges and tximeta case study

Copynumberplots ⭐ 6

R package to create plots representing copy number data using karyoploteR

Vcfwrenchr ⭐ 5

Basic R package for VCF reformatting (json and tab-delimited text)

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