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Search results for genome threshold

11 search results found

A toolbox for pangenome analysis and threshold evaluation.

Assembly Dereplicator ⭐ 57

A tool for removing redundant genomes from a set of assemblies

Reciprocal_smallest_distance ⭐ 11

Reciprocal Smallest Distance (RSD) is a pairwise orthology algorithm that uses global sequence alignment and maximum likelihood evolutionary distance between sequences to accurately detects orthologs between genomes.

Hotspot2 ⭐ 10

Implementation of hotspot2 by Eric Rynes

Spydrpick ⭐ 9

SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.

Perchlorate Metagenome 2018 ⭐ 8

Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and John D. Coates. (2018) Genome-resolved metagenomics identifies genetic mobility, metabolic interactions, and unexpected diversity in perchlorate-reducing communities.

Sparseassembler ⭐ 8

A sparse k-mer graph based, memory-efficient genome assembler.

Bacterial taxonomy construction and evaluation in R

Pathospot Visualize ⭐ 5

Interactively visualize data from pathoSPOT-compare to find potential outbreaks

Genefamilyanalysis ⭐ 5

Compute gene families for a set of genomes.

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