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Search results for genome next generation sequencing

next-generation-sequencing x

11 search results found

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations

Rapid large-scale prokaryote pan genome analysis

Circlator ⭐ 193

A tool to circularize genome assemblies

Artemis ⭐ 191

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)

DNAscan is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring very little computational effort and memory usage.

Gff3toembl ⭐ 20

Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI

Informme ⭐ 15

An information-theoretic pipeline for methylation analysis of WGBS data

Copy number estimation of highly duplicated sequences

Sideretro ⭐ 7

A pipeline for detecting Somatic Insertion of DE novo RETROcopies

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