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Search results for genome bioinformatics pipeline

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33 search results found

Rapid large-scale prokaryote pan genome analysis

Circlator ⭐ 193

A tool to circularize genome assemblies

Artemis ⭐ 191

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

Atac_dnase_pipelines ⭐ 135

ATAC-seq and DNase-seq processing pipeline

TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.

V-pipe is a pipeline designed for analysing NGS data of short viral genomes

A handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysis. 一个简易且全面的 WGS/WES 分析流程生成器.

Wholegenomesequencing ⭐ 86

Whole Genome Sequencing analysis, WGS analysis

Neoantigen Vaccine Pipeline ⭐ 72

Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines

Mtoolbox ⭐ 44

A bioinformatics pipeline to analyze mtDNA from NGS data

Phigaro is a scalable command-line tool for predicting phages and prophages

Metage2metabo ⭐ 42

From annotated genomes to metabolic screening in large scale microbiotas

DNAscan is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring very little computational effort and memory usage.

Speciesprimer ⭐ 26

The SpeciesPrimer pipeline is intended to help researchers finding specific primer pairs for the detection and quantification of bacterial species in complex ecosystems.

Order and orientation of complete bacterial genomes

gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (WGBS).

Grupo Estudo Bioinformatica ⭐ 22

Repositório do grupo de estudo de Bioinformática da rede de comunidades das PyLadies Brasil.

Gff3toembl ⭐ 20

Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI

Genomedisco ⭐ 18

Software for comparing contact maps from HiC, CaptureC and other 3D genome data.

Pipernaseq ⭐ 16

A comprehensive pipeline for RNAseq data analysis

Tes_genes_relationship_pipeline ⭐ 15

Distribution of TEs and their relationship to genes in host genome

Sc2 Illumina Pipeline ⭐ 14

Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub

Streamformatics ⭐ 13

Real-time species-typing visualisation for nanopore data.

Set of tools for viral metagenomics.

Circompara ⭐ 12

🔬 A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data

Positive Selection ⭐ 10

Scripts and procedures for detecting positively selected genes and codons in primates

Modular Assembly Hs18 ⭐ 9

Mix and match modular genome assembler components

A suite of unique bioinformatics tools for the brave explorer.

Hic Inspector ⭐ 8

HiC-inspector, a bioinformatics pipeline to facilitate the analysis of HiC dataset.

Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.

Nextflow bioinformatics pipeline for large-scale analysis of Multiple Myeloma genomes

Bioinformatics pipeline to process genotyping-by-sequencing (GBS) data

Recenthgt ⭐ 5

A novel bioinformatics pipeline for recent horizontal gene transfer detecting.

Bioinformatics pipeline for nanopore sequencing data

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