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Search results for gene regulatory network
gene-regulatory-network
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22 search results found
Graphein
⭐
932
Protein Graph Library
Pyscenic
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321
pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.
Maestro
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181
Single-cell Transcriptome and Regulome Analysis Pipeline
Dictys
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86
Context specific and dynamic gene regulatory network reconstruction and analysis
Netzoor
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85
netZooR is a network biology package implemented in R.
Netzoopy
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71
netZooPy is a network biology package implemented in Python.
Scope
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56
Fast visualization tool for large-scale and high dimensional single-cell data
Netbooks
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36
Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo tools.
Peca
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35
PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data
Netzoom
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25
netZooM is a network biology package implemented in MATLAB.
Sctenifoldknk
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22
R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.
Maestro
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21
Single-cell Transcriptome and Regulome Analysis Pipeline.
Graphsim
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16
R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)
Sckinetics
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15
Code for scKINETICS (ISMB 2023)
Rss Net
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15
Regression with Summary Statistics exploiting Network Topology.
Sctenifoldnet
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14
A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data
Cefcon
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13
Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data
Netzooc
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11
NetZooC is a package of network methods written in C.
Timeor
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11
TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R
Adversarial Gene Expression
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8
Adversarial generation of gene expression data using Generative Adversarial Networks
Nordic
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6
Network-Oriented Repurposing of Drugs Python Package
Netid_package
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5
A scalable method to infer fate specific gene regulatory network from single cell gene expression data
Related Searches
Python Gene Regulatory Network (10)
Transcription Factors Gene Regulatory Network (7)
R Gene Regulatory Network (7)
Jupyter Notebook Gene Regulatory Network (5)
Single Cell Gene Regulatory Network (4)
Pipeline Gene Regulatory Network (3)
C Gene Regulatory Network (3)
Scrna Seq Gene Regulatory Network (3)
Matlab Gene Regulatory Network (3)
Atac Seq Gene Regulatory Network (3)
1-22 of 22 search results
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