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Pb Metagenomics Tools ⭐ 127

Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics

Babelomics ⭐ 31

Recognizer ⭐ 24

A tool for domain based annotation with databases from the Conserved Domains Database

Hpcleap_dnds ⭐ 16

Sliding window dN/dS vs. functional protein domain comparison tool. Given VectorBase gene id inputs it will aggregate various useful Bioinformatics information available, then allow the user to compare selective pressures acting along the protein sequence vs. an overlay of functional protein domain annotations.

Interfacea ⭐ 15

An open-source library for the analysis of protein interactions.

Package to calculate functional similarity between genes https://biocor.llrs.dev

Gene network analysis

Lncadeep ⭐ 10

LncADeep is an ab initio lncRNA identification and functional annotation tool based on deep learning

⚔️Find splicing-led, functional changes of the proteome.

Chordomics ⭐ 7

Interactive visualisation and data annotation for meta-omics data

Functional Dark Side.github.io ⭐ 7

Functional module detection through integration of single-cell RNA sequencing data with protein–protein interaction networks

Deepsimdef ⭐ 6

deepSimDEF offers single- and multi-channel deep learning models for functional analysis of genes using Gene Ontology annotations of gene products (RNAs, proteins, etc).

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