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Search results for genomics evolution
evolution
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genomics
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17 search results found
Hgtector
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87
HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.
Cogent3
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79
Comparative Genomics Toolkit 3
Wgd
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74
Python package and CLI for whole-genome duplication related analyses
Clipkit
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54
a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference
Quota Alignment
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44
Guided synteny alignment between duplicated genomes (within specified quota constraint)
Phykit
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44
a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies
Zol
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28
zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
Busco_phylogenomics
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26
BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins
Biokit
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20
a versatile toolkit for processing and analyzing diverse types of sequence data
Mcscan
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17
Command-line program to wrap dagchainer and combine pairwise results into multi-alignments in column format
Orthosnap
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16
a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
Whale.jl
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10
Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation
Positive Selection
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10
Scripts and procedures for detecting positively selected genes and codons in primates
Ltee Ecoli
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9
Genomics resources for the Long-Term Evolution Experiment with E. coli
Gluetools
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9
An open, platform-independent software toolkit for storage and interpretation of sequence data, implemented in Java.
Cello
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6
[source] CELLO - Cancer EvoLution toolbox for LOngitudinal data
Recenthgt
⭐
5
A novel bioinformatics pipeline for recent horizontal gene transfer detecting.
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1-17 of 17 search results
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