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34 search results found

Fasten Onprem ⭐ 1,142

Fasten is an open-source, self-hosted, personal/family electronic medical record aggregator, designed to integrate with 100,000's of insurances/hospitals/clinics

Medplum ⭐ 980

Medplum is a healthcare platform that helps you quickly develop high-quality compliant applications.

Pyhealth ⭐ 825

A Deep Learning Python Toolkit for Healthcare Applications.

Medical Concept Annotation Tool

Gnn_for_ehr ⭐ 103

Code for "Graph Neural Network on Electronic Health Records for Predicting Alzheimer’s Disease"

Electronic Health Record Analysis with Python.

Mimic Iv Data Pipeline ⭐ 90

A customizable pipeline for data extraction from MIMIC-IV.

Cogstack Semehr ⭐ 80

Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research

Modular, Production-Ready EHR

Toolkit for health ML implementation

Patient2vec ⭐ 51

Patient2Vec: A Personalized Interpretable Deep Representation of the Longitudinal Electronic Health Record

Phoenix CTMS - the ultimative CTMS/PRS/CDMS.

Biomedicus2 ⭐ 44

Code for the old version of BioMedICUS, for the new version see the biomedicus3 repository.

FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health records

FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algorithms. https://doi.org/10.1093/jamia/ocaa139

Chronological Map Phenotypes ⭐ 39

Machine-readable version of electronic health record phenotypes for Kuan V. and Denaxas S. et al.

An Open Source Hospital Management System

Research Data Management Platform (RDMP) is an open source application for the loading,linking,anonymisation and extraction of datasets stored in relational databases.

Cogstack Nifi ⭐ 29

Building data processing pipelines for documents processing with NLP using Apache NiFi and related services

Badmedicine ⭐ 23

Library and CLI for randomly generating medical data like you might get out of an Electronic Health Records (EHR) system

The official implementation of our paper "MoleRec: Combinatorial Drug Recommendation with Substructure-Aware Molecular Representation Learning" (TheWebConf 2023).

Covid 19_prognosis ⭐ 19

An artificial intelligence system for predicting the deterioration of COVID-19 patients in the emergency department

Medcattutorials ⭐ 18

General tutorials for the setup and use of MedCAT.

Functions to map between ICD-10 terms and PheCodes for UK Biobank hospital electronic health records

Medgan Tips ⭐ 16

[Python] Additional works on Edward Choi's medGAN (generative adversarial network for electronic health records). In particular: boosting the prediction score using dataset augmentation.

Ccks2019 Chinese Clinical Ner ⭐ 16

The word2vec-BiLSTM-CRF model for CCKS2019 Chinese clinical named entity recognition.

Decentralized Personal Health Record Application ⭐ 10

The project uses blockchain and smart contracts to let individuals manage and secure their health data. Its goal is to empower people to control their health information, communicate better with healthcare providers, and drive innovation in healthcare.

Scanner event monitor for web-based scanning of PDF417 barcodes in healthcare setting

💗 npm package for accessing UMLS REST APIs (unofficial)

Toolkit for a learning health system

Diagnosisextraction_ml ⭐ 6

Pipeline for building Machine Learning Classifiers for the diagnosis of EHR text-data. We used this pipeline for our study, published here: https://doi.org/10.2196/23930.

Ehrtemporalvariability ⭐ 6

R package for delineating temporal dataset shifts in Eletronic Health Records

Ehr_mrs_ucla ⭐ 5

A public repo to share methylation risk scores (MRS) derived from UCLA's electronic health records.

Cci Regression ⭐ 5

Charlson Comorbidity Index Regression using Clinical Notes

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