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Search results for electron microscopy
electron-microscopy
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44 search results found
Pycroscopy
⭐
241
Scientific analysis of nanoscale materials imaging data
Atomai
⭐
164
Deep and Machine Learning for Microscopy
Elektronn3
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161
A PyTorch-based library for working with 3D and 2D convolutional neural networks, with focus on semantic segmentation of volumetric biomedical image data
Scikit Ued
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120
Collection of algorithms and routines for (ultrafast) electron diffraction and scattering
Cloud Volume
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120
Read and write Neuroglancer datasets programmatically.
Axondeepseg
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112
Axon/Myelin segmentation using Deep Learning
Libertem
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104
Open pixelated STEM framework
Computational Cryoem
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73
A curated list of awesome computational cryo-EM methods.
Awesome Cryoem
⭐
70
A collaborative list of awesome CryoEM (Cryo Electron Microscopy) resources.
Instamatic
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48
Python program for automated electron diffraction data collection
Sofima
⭐
40
Scalable Optical Flow-based Image Montaging and Alignment
Rosettasciio
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37
Python library for reading and writing scientific data format
Phd Thesis
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29
Experimental tech-demo for PhD thesis in Scientific Markdown; official:
Focus
⭐
27
High Throughput Electron Microscopy Image Processing Software
Strainpp
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20
Implementation of geometric phase analysis (GPA) in C++
Artiax
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16
ArtiaX is an open-source extension of the molecular visualisation program ChimeraX.
Computational Cryoet
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16
A curated list of awesome computational cryo-ET methods.
Stemtool
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15
A single package for analyzing atomic resolution STEM, 4D-STEM and STEM-EELS datasets, along with basic STEM simulation functionality
Felix
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14
Felix: Bloch wave method diffraction pattern simulation software
Particlespy
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12
Package for analysing particles in electron microscopy data sets.
Cem Dataset
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12
Utilities for building and using the CEM dataset for unsupervised pre-training and downstream tasks.
Starparser
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12
Manipulate and mine Relion .star files
H5oina
⭐
11
Oxford Instruments NanoAnalysis HDF5 File Specification
Please
⭐
11
PLEASE: The Python Low-energy Electron Analysis SuitE - Enabling rapid analysis and visualization of LEEM and LEED Data.
Em Scalebartools
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11
Fiji/ImageJ macros to quickly add a scale bar to an (electron microscopy) image.
Tomotools
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11
A set of tools for aligning and reconstructing electron tomography data
Automatic Sem Image Segmentation
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10
Workflow for Simulation and Automatic Semantic Segmentation of Electron Microscopy Images
Asi_mtf
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9
Imagej macro to calculate the MTF based on a knife edge measurement
Cltem
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9
OpenCL accelerated multislice simulation for electron microscopy.
Empanada Napari
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8
Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari
Feabas
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8
Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data
Stemia
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8
Scripts and Tools for Electron Microscopy Image Analysis.
Pgure Svt
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7
Singular value thresholding for denoising time-resolved microscopy
Pyserialem
⭐
7
Python module to read/write SerialEM navigator files.
Simplipytem
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7
Package to make analysis of transmission electron microscopy images simple.
Pymontecarlo
⭐
7
Python interface for Monte Carlo simulation programs
Elektronn2
⭐
7
A highly configurable toolkit for training 3D/2D CNNs and general Neural Networks, based on Theano
Leem Analysis
⭐
7
Quantitative Data Analysis for spectroscopic LEEM
Metadata Schemas For Materials Science
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6
Metadata Schemas for describing measurement techniques in Materials Science
Visfd
⭐
6
volumetric image toolkit for simple feature detection (segment tomograms)
Libertem Blobfinder
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5
LiberTEM correlation and refinement library
Ctfsimulation
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5
A CTF Simulation Web App
Temul
⭐
5
Functions for analysis of high resolution electron microscopy and spectroscopy data.
Jmultislicelib
⭐
5
C++ library with implementations of the multislice algorithm for electron diffraction calculations, CPU and GPU code
1-44 of 44 search results
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