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Search results for docker genomics
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genomics
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30 search results found
Cbioportal
⭐
535
cBioPortal for Cancer Genomics
Arvados
⭐
354
An open source platform for managing and analyzing biomedical big data
Miso Lims
⭐
214
MISO: An open-source LIMS for NGS sequencing centres
Hicexplorer
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197
HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
Hts Nim
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151
nim wrapper for htslib for parsing genomics data files
Cloud Pipeline
⭐
137
Cloud agnostic genomics analysis, scientific computation and storage platform
Sarek
⭐
126
Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
Igv Snapshot Automator
⭐
122
Script to automatically create and run IGV snapshot batchscripts
Omicsplayground
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112
Visual self-service analytics platform for big omics data.
Dockerflow
⭐
90
Dockerflow is a workflow runner that uses Dataflow to run a series of tasks in Docker with the Pipelines API
Aegea
⭐
68
Amazon Web Services Operator Interface
Balsamic
⭐
40
Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
Bio Dockers
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32
🐳 Bio-dockers: dockerized bioinformatic tools
Nf Hack17 Tutorial
⭐
31
Nextflow basic tutorial for newbie users
Workflows
⭐
28
Bioinformatics workflows developed for and used on the St. Jude Cloud project.
Kogia
⭐
22
Docker containers for bioinformatics with a small footprint
R_docker
⭐
19
Docker container for genomics analyses in R.
Cgl Docker Lib
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18
Grandeur
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13
UPHL's Reference Free Pipeline
Variant2literature
⭐
13
Genomehubs
⭐
12
Search and explore genomic metadata, Earth BioGenome Project progress and assembly features
Hicbrowser
⭐
11
Simple web browser to visualize HiC tracks
Bioinformatics Toolbox
⭐
10
Docker container for bioinformatics tools and pipelines
Metaomics
⭐
10
Shiny GUI application for genomics meta-analysis
Pygmql
⭐
9
Python Library for data analysis based on GMQL
Snakemake_rnaseq
⭐
8
A Snakemake pipeline to go from fastq mRNA sequencing files to raw and normalised counts (usable for downstream EDA and differential analysis)
Sbg Cgc_course2018
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6
IARC course on analyzing TCGA data in the SevenBridges Genomics CancerGenomicsCloud (SBG-CGC)
Cello
⭐
6
[source] CELLO - Cancer EvoLution toolbox for LOngitudinal data
Upward
⭐
5
UPWARD: Uniting People Working Against Rare Diseases
Nf Repeatmasking
⭐
5
Nextflow workflow for automatic repeat detection, classification and masking
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