Awesome Open Source

Programming Languages

Search results for deep learning protein structure

deep-learning x

protein-structure x

29 search results found

Graphein ⭐ 932

Protein Graph Library

Proteinnet ⭐ 623

Standardized data set for machine learning of protein structure

Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.

Uni Fold ⭐ 320

An open-source platform for developing protein models beyond AlphaFold.

Recurrent Geometric Networks for end-to-end differentiable learning of protein structure

Sidechainnet ⭐ 256

An all-atom protein structure dataset for machine learning.

Deep generative models of 3D grids for structure-based drug discovery

Protein Sequence Embedding Iclr2019 ⭐ 203

Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019

Proteinflow ⭐ 151

Versatile computational pipeline for processing protein structure data for deep learning applications.

Deeplytough ⭐ 115

DeeplyTough: Learning Structural Comparison of Protein Binding Sites

Tape Neurips2019 ⭐ 115

Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology. (DEPRECATED)

Proteinsecondarystructure Cnn ⭐ 93

Protein Secondary Structure predictor using Convolutional Neural Networks

Proteinworkshop ⭐ 93

Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models and training/task utilities.

Ddpm Proteins ⭐ 64

A denoising diffusion probabilistic model (DDPM) tailored for conditional generation of protein distograms

Geometric deep learning method to predict protein binding interfaces from a protein structure.

Awesome Structural Bioinformatics ⭐ 54

Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your cold brew almond milk latte and read this.

De novo protein structure prediction using iteratively predicted structural constraints

Geometric Vector Perceptron ⭐ 29

Implementation of Geometric Vector Perceptron, a simple circuit for 3d rotation equivariance for learning over large biomolecules, in Pytorch. Idea proposed and accepted at ICLR 2021

Manyfold ⭐ 28

🧬 ManyFold: An efficient and flexible library for training and validating protein folding models

Parapred ⭐ 25

Paratope Prediction using Deep Learning

PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.

State-of-the-art ab initio prediction of 1D protein structure annotations

Deepmetapsicov ⭐ 9

Deep ResNet-based protein contact prediction

Pymissense ⭐ 9

PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.

Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing

Cancer Suppressor Gene Deep Learning ⭐ 7

Cancer Suppressor Gene and Oncogene Prediction using Deep Learning (CNN)

Universal Transforming Geometric Network for protein structure prediction.

Ps4 Dataset ⭐ 5

The largest open-source dataset for Protein Single Sequence Secondary Structure prediction.

Pointsite ⭐ 5

PointSite: a point cloud segmentation tool for identification of protein ligand binding atoms

Related Searches

Python Deep Learning (18,862)

Jupyter Notebook Deep Learning (10,328)

Deep Learning Tensorflow (5,868)

Deep Learning Neural Network (5,801)

Deep Learning Pytorch (4,655)

Deep Learning Convolutional Neural Networks (4,142)

Deep Learning Neural (3,734)

Network Deep Learning (3,532)

Deep Learning Computer Vision (3,365)

Deep Learning Artificial Intelligence (2,898)

1-29 of 29 search results

Privacy | About | Terms | Follow Us On Twitter

Copyright 2018-2024 Awesome Open Source. All rights reserved.