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Percolator ⭐ 112

Semi-supervised learning for peptide identification from shotgun proteomics datasets

Olinkrpackage ⭐ 68

Olink R package: A collection of functions to facilitate analysis of proteomic data from Olink. The goal of this package is to help users extract biological insights from proteomic data run on the Olink platform.

Proteomicsml ⭐ 33

Community-curated tutorials and datasets for ML in proteomics

Deeprtplus ⭐ 30

Deep (Transfer) Learning for Peptide Retention Time Prediction

Causalpath ⭐ 27

A project for exploring differentially active signaling paths related to proteomics datasets

Pcprophet ⭐ 11

Framework for systematic discovery of novel complexes and differential analysis of cofractionation MS datasets

Proteomics Mass Spectrometry Datasets for Machine Learning

Motrpacbicqc ⭐ 6

R package for the MoTrPAC community

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