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29 search results found

Hh Suite ⭐ 429

Remote protein homology detection suite.

⚡ ♒ Rapid prokaryotic genome annotation

Interproscan ⭐ 259

Fast taxonomic classification of metagenomic sequencing reads using a protein reference database

Evcouplings ⭐ 177

Evolutionary couplings from protein and RNA sequence alignments

Dspp Keras ⭐ 160

Protein order and disorder data for Keras, Tensor Flow and Edward frameworks with automated update cycle made for continuous learning applications.

Bio4j abstract model and general entry point to the project

Run_dbcan ⭐ 109

Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for CAZymes.

Dfast_core ⭐ 67

DDBJ Fast Annotation and Submission Tool

The Fluorescent Protein Database

Microbeannotator ⭐ 41

Pipeline for metabolic annotation of microbial genomes

Paperblast ⭐ 27

PaperBLAST: find papers about a protein or its homologs

Recognizer ⭐ 24

A tool for domain based annotation with databases from the Conserved Domains Database

Taxonomer_0.5 ⭐ 21

full taxonomer cython repository

A Shotgun Metagenome Annotation Pipeline

A toolkit to validate and consolidate antimicrobial resistance gene databases

Pantools ⭐ 15

Multiphate ⭐ 14

Throughput PhATE processing of draft or finished phage genomes

SWORD - a highly efficient protein database search

Talk to the NCBI EUtils

Viralrecall ⭐ 12

Detection of NCLDV signatures in 'omic data

Deepalign ⭐ 12

DeepAlign: the protein structure analysis toolkit

OMAmer - tree-driven and alignment-free protein assignment to sub-families

Database of Interacting Protein Structures (DIPS)

Cazy Parser ⭐ 11

A way to extract specific information from CAZy

Alignment-free Protein Motif Miner

Activedriverdb ⭐ 10

Viroblaststandalone ⭐ 10

ViroBLAST standalone package

Sequence Database Curator ⭐ 10

This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).

Cazy_webscraper ⭐ 10

Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.

an easy to use implementation of the NCBI taxonomy database for daily use

Map_viruses ⭐ 9

Align short reads against viral genomes in protein space

WhatsGNU: a tool for identifying proteomic novelty

D2P2 website and data munging code.

Multiphate2 ⭐ 8

multiPhATE with comparative genomics

Darkhorse2 ⭐ 7

DarkHorse2 source code

Fantastic_databases_and_where_to_find_them ⭐ 7

Repository of databases for omic data

A molecular docking pipeline for the drug database against SARS-CoV2

Fasta_utilities ⭐ 6

Utilities for downloading and managing protein FASTA files.

Tgt_package ⭐ 6

Generate A3M and TGT file from a given sequence in FASTA format.

2d Protein Shape Matching ⭐ 6

find 2d views of proteins that look like your favorite shape

Hgt Finder ⭐ 6

Program for finding horizontal gene transfer using BLAST result

A blast-based protein homology pipeline

Compara Deep Learning ⭐ 5

Using Deep Learning techniques to enhance orthology calls

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