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Search results for database metagenomics
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11 search results found
Kaiju
⭐
236
Fast taxonomic classification of metagenomic sequencing reads using a protein reference database
Krakenuniq
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201
🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results
Bonsai
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68
Bonsai: Fast, flexible taxonomic analysis and classification
Metacache
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49
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
Microbiomebestpracticereview
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45
Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
Struo2
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42
Scalable creating/updating of metagenome profiling databases
Struo
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40
Ley Lab MetaGenome Profiler DataBase generator
Pipeline V5
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19
This repository contains all CWL descriptions of the MGnify pipeline version 5.0.
Super Focus
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19
A tool for agile functional analysis of shotgun metagenomic data
Matam
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18
Mapping-Assisted Targeted-Assembly for Metagenomics
Metameta
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18
Virmet
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13
Set of tools for viral metagenomics.
Sequence Database Curator
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10
This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).
Framework
⭐
10
Open-source opinionated Galaxy-based framework for microbiota analysis
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