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Search results for covid 19 genomics

6 search results found

A package for designing compact and comprehensive capture probe sets.

Cov Spectrum Website ⭐ 54

A web platform to detect and analyze variants of SARS-CoV-2

Covid 19 Genomes ⭐ 43

Projects on COVID-19 topic of genomic sequencing - mostly DataViz

Interartic ⭐ 29

InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..

Omxware Getting Started ⭐ 15

Examples to get started with IBM Functional Genomics Platform

Covigator Ngs Pipeline ⭐ 15

A Nextflow pipeline for NGS variant calling on SARS-CoV-2. From FASTQ files to normalized and annotated VCF files from GATK, BCFtools, LoFreq and iVar.

This project proposes to contribute to fill the knowledge gap about Covid-19SARS-CoV-2 in Brazil and with the global knowledge about the pathogen. The scientific community and governments of other countries are looking for actions along these lines. The United Kingdom recently established a research network for genomic studies of SARS-CoV-2Covid-19 with a contribution of GBP 20 million (https://www.gov.uk/government/news/uk-launches-wh genome-sequence-alliance-to-map-spread-of-coronavi

Nf Ncov Voc ⭐ 5

A Nextflow wrapped workflow for generating the mutation profiles of SARS-CoV-2 genomes (Variants of Concern and Variants of Interest). Workflow is developed in collaboration with COVID-MVP (https://github.com/cidgoh/COVID-MVP) which can be used to visualize the mutation profiles and functional annotations.

Python Outbreak Info ⭐ 5

Python package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info

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