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18 search results found
Quast
⭐
327
Genome assembly evaluation tool
Redundans
⭐
121
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
Abricate
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109
🔎 💊 Mass screening of contigs for antimicrobial and virulence genes
Pufferfish
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104
An efficient index for the colored, compacted, de Bruijn graph
Platon
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93
Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.
Mccortex
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86
De novo genome assembly and multisample variant calling
Wally
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86
Wally: Visualization of aligned sequencing reads and contigs
Graphbin
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80
✨🧬 Refined binning of metagenomic contigs using assembly graphs
Plasflow
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61
Software for prediction of plasmid sequences in metagenomic assemblies
Funcscan
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49
(Meta-)genome screening for functional and natural product gene sequences
Allhic
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41
Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
Consent
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40
Scalable long read self-correction and assembly polishing with multiple sequence alignment
Metacoag
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36
🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs
Graphbin2
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24
☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs
Reads For Assembly
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17
Simulate metagenomic short reads from one or more populations.
Bioinformatics Tools
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14
Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files
Cenote_unlimited_breadsticks
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6
DEPRECATED: Discover divergent virus sequences, prune flanking cellular sequences, make basic report
Plasmidpicker
⭐
5
Software to identify plasmid sequence data from metagenome using logistic regression and Minhash
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1-18 of 18 search results
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