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Search results for conda fastq

10 search results found

Bactopia ⭐ 281

A flexible pipeline for complete analysis of bacterial genomes

Mcclintock ⭐ 83

Meta-pipeline to identify transposable element insertions using next generation sequencing data

Ngspeciesid ⭐ 41

Reference-free clustering and consensus forming of long-read amplicon sequencing

Mpraflow ⭐ 27

A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data

Biohansel ⭐ 21

Rapidly subtype microbial genomes using single-nucleotide variant (SNV) subtyping schemes

Open-source bioinformatics pipeline for the preprocessing of raw sequencing data.

Metax_bakeoff_2019 ⭐ 10

Snakemake_rnaseq ⭐ 8

A Snakemake pipeline to go from fastq mRNA sequencing files to raw and normalised counts (usable for downstream EDA and differential analysis)

Nanopore_ncm18 ⭐ 7

Helpful scripts for working with Oxford Nanopore Sequencing data

Tagseq Qiime2 Snakemake ⭐ 6

Pipeline to run qiime2 with snakemake

Nxf Fastqc ⭐ 5

A simple fastp-MultiQC nextflow pipeline

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1-10 of 10 search results

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