Awesome Open Source

Programming Languages

Search results for classification metagenomics

classification x

19 search results found

Krakenuniq ⭐ 201

🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results

Taxprofiler ⭐ 78

Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data

Bonsai: Fast, flexible taxonomic analysis and classification

Metagenomics Index Correction ⭐ 67

Deepmicrobes ⭐ 61

DeepMicrobes: taxonomic classification for metagenomics with deep learning

Woltka: a versatile meta'omic data classifier

Metacache ⭐ 49

memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping

tiara – a tool for DNA sequence classification

Taxpasta ⭐ 21

TAXnomic Profile Aggregation and STAndardisation

Taxtriage ⭐ 11

TaxTriage is designed in concordance with CDC recommendations to provide clinical environments the necessary tools to generate classification reports (using Kraken2) in a metagenomics scope. It is bundled with Nextflow to provide a seamless installation and usage experience. It is currently being developed as an alpha version and is intended for a full release by October of 2022

deSAMBA: fast and accurate classification of metagenomics long reads with sparse approximate matches

Glimmer Mg ⭐ 9

Gene prediction in metagenomic sequences using Glimmer augmented by phylogenetic classification and clustering

fast classification of metagenomic sequences with lightweight de Bruijin graph-based reference indexing

K2Mem is a variant of Kraken 2 taxonomic sequence classification system that can learn from the previous classifications.

Pangea Plus ⭐ 5

A new implementation of PANGEA pipeline for metagenomics with multiple classification methods and consensus analysis

Pipelines ⭐ 5

Conveyor-based analysis pipelines for metagenome data

Plasmidpicker ⭐ 5

Software to identify plasmid sequence data from metagenome using logistic regression and Minhash

Deepmicrobes ⭐ 5

DeepMicrobes: a deep learning architecture for taxonomic classification of shotgun metagenomic reads

Related Searches

Python Classification (6,140)

Jupyter Notebook Classification (3,847)

Machine Learning Classification (2,529)

Dataset Classification (1,516)

Deep Learning Classification (1,256)

Tensorflow Classification (1,082)

Classification Convolutional Neural Networks (1,007)

Neural Network Classification (906)

Pytorch Classification (893)

Neural Classification (881)

1-19 of 19 search results

Privacy | About | Terms | Follow Us On Twitter

Copyright 2018-2024 Awesome Open Source. All rights reserved.