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Search results for cell segmentation
cell-segmentation
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33 search results found
Cellpose
⭐
1,153
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
Qupath
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934
QuPath - Bioimage analysis & digital pathology
Stardist
⭐
788
StarDist - Object Detection with Star-convex Shapes
Tiatoolbox
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277
Computational Pathology Toolbox developed by TIA Centre, University of Warwick.
Micro Sam
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240
Segment Anything for Microscopy
Usiigaci
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187
Usiigaci: stain-free cell tracking in phase contrast microscopy enabled by supervised machine learning
Etl_unicorn
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156
数据可视化, 数据挖掘, 数据处理 ETL
Spateo Release
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135
Spatiotemporal modeling of spatial transcriptomics
Deepliif
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126
Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22, MICCAI'23, Histopathology'23]
Celldetection
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93
Instance Segmentation with PyTorch & PyTorch Lightning.
Hiformer
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86
HiFormer: Hierarchical Multi-scale Representations Using Transformers for Medical Image Segmentation (WACV 2023)
Mediar
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83
(NeurIPS 2022 CellSeg Challenge - 1st Winner) Open source code for "MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality Microscopy"
Cell Detr
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57
Official and maintained implementation of the paper "Attention-Based Transformers for Instance Segmentation of Cells in Microstructures" [BIBM 2020].
Ultrack
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53
Cell tracking and segmentation software
Cellseg_models.pytorch
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40
Encoder-Decoder Cell and Nuclei segmentation models
Impartial
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28
Interactive deep learning whole-cell segmentation and thresholding using partial annotations
Cell Segmentation
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26
PyTorch implementation of several neural network models for cellular image segmentation
Simpli
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24
SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
Cell_segmentation_and_tracking
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20
For cell segmentation and tracking.
Clustermap
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18
ClusterMap for multi-scale clustering analysis of spatial gene expression
Cell Segmentation
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14
Automated identification of cell boundaries from the pathological video data
Csml
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9
Cell Segmenter using Machine Learning
Yeast In Microstructures Dataset
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8
Official and maintained implementation of the dataset paper "An Instance Segmentation Dataset of Yeast Cells in Microstructures" [EMBC 2023].
3dcellseg
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8
Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (However, I think the title should be "3DCellSeg - a robust deep learning-based 3D cell instance segmentation pipeline".)
Scellseg Publish
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8
A style-aware deep learning model for adaptive cell instance segmentation by contrastive fine-tuning.
Histojs
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7
HistoJS: Web-Based Analytical Tool for Multiplexed Images. Limited Github Online Demo 👇
Asf Yolo
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7
Official implementation of "ASF-YOLO: A Novel YOLO Model with Attentional Scale Sequence Fusion for Cell Instance Segmentation".
Bmen4460 Nb1 Simple_cell_segmentation_with_a_single_layered_perceptron
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6
Child repository of Deep-learning-with-PyTorch-and-GCP
Epitools
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6
Quantifying 2D cell shape and epithelial tissue dynamics
Cancer Instance Segmentation From Tissue
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6
Tissue Segmentation of Cancer using DeepLabV3 + Resnet101, U-Net, Inception U-Net, RefineNet
Amazon Sagemaker Cell Segmentation Workshop
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5
This workshop outlines a machine-learning cell segmentation architecture from scratch for the life-sciences vertical, using Amazon SageMaker, S3, Lambda and SageMaker Inference endpoints
Cellsegmentationtracker
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5
A Python module intended to make cell segmentation, tracking and subsequent (mostly biophysical) statisticial analysis easy
Cellcounter
⭐
5
A small GUI application for counting cells in microscope images
1-33 of 33 search results
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