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cancer
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124 search results found
Deepslide
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449
Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.
Sarek
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299
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Awesome Cancer Variant Databases
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284
A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.
Pygeno
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242
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
Pcgr
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234
Personal Cancer Genome Reporter (PCGR)
Arriba
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165
Fast and accurate gene fusion detection from RNA-Seq data
Captk
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131
Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk
Mutscan
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127
Detect and visualize target mutations by scanning FastQ files directly
Sarek
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126
Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
Slicerradiomics
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94
A Slicer extension to provide a GUI around pyradiomics
Cognoma
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91
Putting machine learning in the hands of cancer biologists
Genefuse
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86
Gene fusion detection and visualization
Genomicdatacommons
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80
Provide R access to the NCI Genomic Data Commons portal.
Ml Mt Webapp
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78
This project is all about a Machine Learning based Medical Test web app which makes predictions about various diseases using the concept of machine learning.
Biodynamo
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78
BioDynaMo is a high-performance and modular, agent-based simulation platform.
Front End
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76
Federated Learning based Deep Learning. Docs: https://fets-ai.github.io/Front-End/
Datamicroarray
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76
A collection of small-sample, high-dimensional microarray data sets to assess machine-learning algorithms and models.
Pnet_prostate_paper
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71
P-NET, Biologically informed deep neural network for prostate cancer classification and discovery
Pancancer
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61
Building classifiers using cancer transcriptomes across 33 different cancer-types
Healthcheck
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58
Health Check ✔ is a Machine Learning Web Application made using Flask that can predict mainly three diseases i.e. Diabetes, Heart Disease, and Cancer.
Hyperfoods
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56
It was built a web application as a step forward in building a 3D recommendation system.
Cpsr
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50
Cancer Predisposition Sequencing Reporter (CPSR)
Civic Client
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49
Web client for CIViC: Clinical Interpretations of Variants in Cancer
Tcia_notebooks
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49
Notebooks for working with The Cancer Imaging Archive datasets
Cancer Whitepaper
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46
Cancer Whitepaper
Agfusion
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46
Python package to annotate and visualize gene fusions.
Oncoenrichr
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46
Cancer-dedicated gene set interpretation
Ampliconsuite Pipeline
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46
A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior to running AmpliconArchitect. Previously called PrepareAA.
Awesome Biological Visualizations
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41
A list of web-based interactive biological data visualizations.
Cancer Donation Portal Python Flask App
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41
Flask App for Cancer Donation Portal using basic Python, SQLite3, HTML, CSS and Javascript
Civic Server
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39
Backend Server for CIViC Project
2020plus
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39
Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests
Shiny Iatlas
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36
An interactive web portal for exploring immuno-oncology data
Cancermine
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36
Text-mined knowledgebase for drivers, oncogenes and tumor suppressors in cancer
Iarc Nf
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35
List of IARC bioinformatics nextflow pipelines
Hotspot3d
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33
3D hotspot mutation proximity analysis tool
Rnaseq_titration_results
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29
Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously
Classifying Cancer
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29
A Python-Tensorflow neural network for classifying cancer data
Lung Image Analysis
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26
A basic framework for pulmonary nodule detection and characterization in CT
Kg4sl
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25
Synthetic lethality (SL) is a promising gold mine for the discovery of anti-cancer drug targets. KG4SL is the first graph neural network (GNN)-based model that uses knowledge graph for SL prediction.
Histopathologic_cancer_detector
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25
CNN histopathologic tumor identifier.
Bus Segmentation
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24
MATLAB implementation to segment breast lesions in ultrasound images (ICIAR 2016)
Beyondcell
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23
Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq data and proposing cancer-specific treatments.
Ci4cc Informatics Resources
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23
Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are developing.
Fusiondirect.jl
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23
(No maintenance) Detect gene fusion directly from raw fastq files
Canreg5
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22
CanReg5 is a multi user, multi platform, open source tool to input, store, check and analyse cancer registry data.
Cacao
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22
Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer
Cell Health
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21
Predicting Cell Health with Morphological Profiles
Cancerdb
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21
CancerDB: a computable encyclopedia about cancer.
Scarhrd
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21
Civicmine
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19
Text mining cancer biomarkers for the CIVIC database
Mageri
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19
MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers
Unitopatho
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18
Dataset of 9536 H&E-stained patches for colorectal polyps classification and adenomas grading | ICIP21 https://doi.org/10.1109/ICIP42928.2021.9506198
Civic V2
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18
CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer
Imsig
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17
Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours
Ctdnatools
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17
R package to work with ctDNA sequencing data
Superacao App
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16
Aplicativo para o projeto "Anjos do SuperAção"
Skin Cancer Image Classification
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16
Skin cancer classification using Inceptionv3
Biocancer
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15
♋ 🆓 A Shiny App for Interactive Multi-OMICS Cancer Data Visualization and analysis
Misteli Lab Ccr Nci
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15
Collection of statistical scripts, image analysis workflows, data used in publications by the Misteli Lab.
Staging Client Java
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15
A cancer staging client library for Java applications.
Spechla
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15
SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events.
Pasmopy
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14
Patient-Specific Modeling in Python
Cancer Data
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14
TCGA data acquisition and processing for Project Cognoma
Pegasas
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14
Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)
Genescf
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14
Gene Set Clustering based on Functional annotation
Smartas
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13
📓Notebook of Climente-González et al. (2017), The Functional Impact of Alternative Splicing in Cancer.
Superacao Core
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12
Aplicação core de gestão do programa "Anjos do Superação"
Omiembed
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12
Multi-task deep learning framework for multi-omics data analysis
Sigma
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11
SigMa is a probabilistic model for the sequential dependencies of mutation signatures
R_intro
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11
four class intro to R: basic syntax, data manipulation, data viz
Isitsaturday
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10
Checks if it's s**tpost saturday
Bioinformatics
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10
A suite of bioinformatics data processing and analysis pipelines, software, and training resources for common DNA and RNA sequence analysis methods.
Emmaa
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10
Ecosystem of Machine-maintained Models with Automated Analysis
Hotmaps
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10
Detects hotspot regions for somatic mutations in 3D protein structures
Isotope
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10
ISOform-guided prediction of epiTOPEs in cancer
Trisicell
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9
Scalable tumor phylogeny inference and validation from single-cell RNA or DNA data
Tmexplorer
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9
A collection of tumour microenvironment single-cell RNA sequencing datasets for use in R and other pipelines.
Skinsense
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9
This is an Android app to detect melanoma skin cancer using tensorflow mobile.
Pancancer Evaluation
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9
Evaluating genome-wide prediction of driver mutations using pan-cancer data
Pdx_exomeseq
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9
Pipeline analysis for whole exome sequencing of pancreatic cancer PDX models
Gbm_immune_validation
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8
Validating glioblastoma immune cell immunohistochemsitry using computational deconvolution of TCGA tumors
Hgsc_subtypes
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8
Two or three subtypes of high grade serous ovarian cancer subtypes fit data from different populations better than four
Sh2 Cancer
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8
MSM model of SH2-phosphoprotein cancer networks
Capstone
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8
Tcgabiolinks Downloader
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8
GNU Make-driven workflow to download TCGA data via the TCGAbiolinks package
Webgen
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8
WebGen Vertically Integrated Project
Locusexplorer
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8
An interactive graphical illustration of genetic associations and their biological context
Multifactorial Immune Response
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7
Multifactorial modeling of response to checkpoint inhibitor immunotherapy from tumor, immune, and clinical features
Cancerous_cells_scans_processing
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7
Predict survival time from PET scans
Cancer Suppressor Gene Deep Learning
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7
Cancer Suppressor Gene and Oncogene Prediction using Deep Learning (CNN)
Crescent
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7
The CanceR Single Cell ExpressioN Toolkit one-line-command applications.
Seerapi Client Java
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7
A SEER*API Java client
Cancerdiagnosis Teachingmaterial
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7
Detect whether a tumor is benign or cancerous
Skincancerdetection
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7
🔍 Skin cancer detection with pretrained CNN ported to front-end.
Circrna Pipeline
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7
Cancer circRNA identification pipeline with an ensemble approach
Curatedpcadata
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7
Curated Prostate Cancer Data R-package
Mgp1000
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7
Nextflow bioinformatics pipeline for large-scale analysis of Multiple Myeloma genomes
Pfa Scannet
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6
PFA-ScanNet: Pyramidal Feature Aggregation with Synergistic Learning for Breast Cancer Metastasis Analysis
Probabilistic2020
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6
Simulates somatic mutations, and calls statistically significant oncogenes and tumor suppressor genes based on a randomization-based test
1-100 of 124 search results
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