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Search results for c plus plus rna seq
c-plus-plus
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rna-seq
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21 search results found
Salmon
⭐
661
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
Arriba
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165
Fast and accurate gene fusion detection from RNA-Seq data
Rnaseqc
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132
Fast, efficient RNA-Seq metrics for quality control and process optimization
Tophat
⭐
83
Spliced read mapper for RNA-Seq
Tpmcalculator
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74
TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files
Jaffa
⭐
51
JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions
Rattle
⭐
51
Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
Squid
⭐
36
SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
Expressionmatrix2
⭐
27
Software for exploration of gene expression data from single-cell RNA sequencing.
Bird
⭐
27
Big data Regression for predicting DNase I hypersensitivity
Splam
⭐
24
✂️ Deep learning-based splice site predictor that improves spliced alignments
Idea
⭐
23
Differential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)
Popscle
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22
A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and auxilary tools
Heatmapgenerator
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19
Cross-platform GUI desktop application for making biological heatmaps
Orna
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17
Fast in-silico normalization algorithm for NGS data
Rnaseqmut
⭐
14
RNA-Seq Mutation Detection
Gcen
⭐
14
GCEN: an easy-to-use toolkit for Gene Co-Expression Network analysis and lncRNAs annotation
Rcount
⭐
12
Rcount: simple and flexible RNA-Seq read counting
Isonclust2
⭐
11
A tool for de novo clustering of long transcriptomic reads
Shark
⭐
10
Mapping-free software for fishing relevant reads in an RNA-Seq sample
Varus
⭐
7
RNA-Seq sampling
Circminer
⭐
5
A sensitive and fast tool for circular RNA detection from RNA-Seq data
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1-21 of 21 search results
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