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Search results for c protein
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protein
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24 search results found
Hh Suite
⭐
429
Remote protein homology detection suite.
Fpocket
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236
fpocket is a very fast open source protein pocket detection algorithm based on Voronoi tessellation. The platform is suited for the scientific community willing to develop new scoring functions and extract pocket descriptors on a large scale level. fpocket is distributed as free open source software. If you are interested in integrating fpocket in an industrial setting and require official support, please contact Discngine (www.discngine.com).
Kaiju
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236
Fast taxonomic classification of metagenomic sequencing reads using a protein reference database
Metaeuk
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142
MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics
Famsa
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101
Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)
Plass
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99
Protein-Level ASSembler (PLASS): sensitive and precise protein assembler
Fasta36
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95
Git repository for FASTA36 sequence comparison software
Plmc
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83
Inference of couplings in proteins and RNAs from sequence variation
Raptorx 3dmodeling
⭐
81
Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will update this as soon as possible.
Tcoffee
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77
A collection of tools for Multiple Alignments of DNA, RNA, Protein Sequence
Ccmpred
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56
Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.
Dmpfold
⭐
51
De novo protein structure prediction using iteratively predicted structural constraints
Paladin
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50
Protein Alignment and Detection Interface
Naf
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32
Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences
Entap
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30
Eukaryotic Non-Model Transcriptome Annotation Pipeline - Latest Release v1.0.1
Taxonomer_0.5
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21
full taxonomer cython repository
Shifted Hamming Distance
⭐
17
Source code for the Shifted Hamming Distance (SHD) filtering mechanism for sequence alignment. Described in the Bioinformatics journal paper (2015) by Xin et al. at http://users.ece.cmu.edu/~omutlu/pub/shifted-hammi
Popscomp
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11
Solvent Accessible Surface Areas of Biomolecules and their Complexes
Deepmetapsicov
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9
Deep ResNet-based protein contact prediction
Adcp
⭐
8
AutoDock CrankPep for peptide and disordered protein docking
Shd_code
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7
Zoomqa
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6
Machine learning method for estimation of protein tertiary structure local quality
Stress
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5
Hbind
⭐
5
Calculates hydrogen-bond interaction tables for protein-small molecule complexes, based on protein PDB and protonated ligand MOL2 structure input. Raschka et al. (2018) J. Computer-Aided Molec. Design
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