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18 search results found
Ngs
⭐
1,252
Next Generation Shell (NGS)
Sra Tools
⭐
1,015
SRA Tools
Mutscan
⭐
127
Detect and visualize target mutations by scanning FastQ files directly
Player2d
⭐
83
Educational demo implementing a swept 2D character controller
Burst
⭐
54
An ultrafast optimal aligner for mapping large NGS data to large genome databases.
Uniquekmer
⭐
33
Generate unique KMERs for every contig in a FASTA file
Hpg Aligner
⭐
32
HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment
Fastq_utils
⭐
29
Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.
Allelecount
⭐
23
Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each allele [ACGT] at that location (given any filter settings)
Kart
⭐
21
Kart: A divide-and-conquer algorithm for NGS read mapping with high error tolerance
Ngsf
⭐
18
Estimation of per-individual inbreeding coefficients under a probabilistic framework
Lava
⭐
13
LAVA: Lightweight Assignment of Variant Alleles
Cellcoal
⭐
11
CellCoal: coalescent simulation of single-cell NGS genotypes
Hpg Methyl
⭐
7
An ultrafast and highly sensitive Next-Generation Sequencing (NGS) read mapper and methylation extractor.
Malva
⭐
7
genotyping by Mapping-free ALternate-allele detection of known VAriants
Game05
⭐
6
Windows, OSX, iOS GLSL starter kit.
Stringmeup
⭐
5
A post-processing tool to reclassify Kraken 2 output based on the confidence score and/or minimum minimizer hit groups.
Mpisort
⭐
5
mpi implementation of sorting NGS data
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1-18 of 18 search results
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