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Search results for bioinformatics pipeline snakemake
bioinformatics-pipeline
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snakemake
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12 search results found
Seq2science
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132
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
V Pipe
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119
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
Snakecharm
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58
Plugin for PyCharm / IntelliJ IDEA Platform IDEs which adds support for Snakemake language.
Pipelines.jl
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39
A lightweight and powerful Julia package for computational pipelines and workflows.
Lsf
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29
Snakemake profile for running jobs on an LSF cluster
Kgwasflow
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19
kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
Daylily
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15
A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0.998.
Riboraptor
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9
Tool for ribo-seq analysis
Mapp
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7
🗺️ MAPP is a computational method which enables identification of binding motifs for RNA-binding proteins that shape pre-mRNA processing under specific conditions.
Celseq2
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5
Generate the UMI count matrix from CEL-Seq2 sequencing data
Allmine
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5
AllMine, a flexible pipeline for Allele Mining. Develloped at INRA's GAFL unit :
Metagenomics
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5
Snakemake workflow for functional analysis of metagenomic WGS read data.
Related Searches
Python Snakemake (142)
Python Bioinformatics Pipeline (119)
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1-12 of 12 search results
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