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Search results for bioinformatics taxonomic classification

bioinformatics x

taxonomic-classification x

9 search results found

Sourmash ⭐ 431

Quickly search, compare, and analyze genomic and metagenomic data sets.

Fast taxonomic classification of metagenomic sequencing reads using a protein reference database

Taxprofiler ⭐ 78

Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data

Massively parallel phylogenetic placement of genetic sequences

Metabuli ⭐ 54

Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.

Kraken Biom ⭐ 33

Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).

Taxpasta ⭐ 21

TAXnomic Profile Aggregation and STAndardisation

Fast and space-efficient taxonomic classification of long reads

Classification_benchmark ⭐ 7

Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification

Ampliconnet ⭐ 5

Sequence based 16S rRNA Taxonomic classifier using MLP

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