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Search results for bioinformatics single cell analysis

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11 search results found

Immunarch ⭐ 256

🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires

Pycomplexheatmap ⭐ 182

PyComplexHeatmap: A Python package to plot complex heatmap (clustermap)

Harmonypy ⭐ 116

🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.

Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets

Honeybadger ⭐ 94

HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data

Celescope ⭐ 73

Single Cell Analysis Pipelines

Spatial-Linked Alignment Tool

Seuratv3wizard ⭐ 26

A web-based interactive (wizard style) application to perform a guided single-cell RNA-seq data analysis and clustering based on Seurat v3

Deep learning-based tissue compositions and cell-type-specific gene expression analysis with tissue-adaptive autoencoder (TAPE)

Clustermap ⭐ 18

ClusterMap for multi-scale clustering analysis of spatial gene expression

A reference-based solution for single-cell analysis

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