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bioinformatics
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rna
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36 search results found
Graphein
⭐
932
Protein Graph Library
Rnartist
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144
With RNArtist, you construct a collection of RNA structures that can be gathered into RNA families, projects,...
Rna Tools
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129
🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs @ http://rna-tools.rtfd.io web @ http://rna-tools.online
Ga4gh Server
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95
Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24
R2dt
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53
Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
Intarna
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41
Efficient target prediction incorporating accessibility of interaction sites
Galaxy Rna Workbench
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38
Galaxy RNA workbench
Rna Playground
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34
Visualize the inner workings of RNA bioinformatics algorithms for structure prediction, interaction prediction and sequence alignment.
Tailfindr
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32
An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
Rnartistcore
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25
A Kotlin DSL to create and plot RNA 2D structures. The drawing engine behind RNArtist to be used from the command line.
Rnacentral Webcode
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25
RNAcentral website source code
Sequencework
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22
programs and scripts, mainly python, for analyses related to nucleic or protein sequences
Aptasuite
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20
A full-featured bioinformatics software collection for the comprehensive analysis of aptamers in HT-SELEX experiments.
Eltetrado
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17
A Python application to find and classify tetrads and quadruplexes in DNA/RNA 3D structures
Metarna
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17
Find target sites for the miRNAs in genomic sequences
Pipernaseq
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16
A comprehensive pipeline for RNAseq data analysis
Eternabrain
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16
Deep learning to solve RNA design puzzles
Rna Science Toolbox
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16
A platform to do RNA science
Fr3d Python
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14
Python implementation of the FR3D software for searching and annotating RNA 3D structures
Rnalien
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14
RNAlien - unsupervised RNA family model construction
Fingernat
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12
Software for detecting non-covalent interactions formed within complexes of nucleic acids with ligands.
Seqshuffle.jl
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9
Shuffle the string sequences such that the k-mer frequency is preserved in each string
Parasor
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9
Parallel solution for local RNA secondary structure analysis
Fr3d
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8
The official repository for "Find RNA 3D" (FR3D), a suite of programs for searching RNA 3D structures.
Rnaglib
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6
Datasets and analysis tools for RNA 3D and 2.5D structures.
Nanotail
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6
R package for visualization and exploratory analysis of Oxford Nanopore direct RNA seq based polyA predictions
Blast Binder
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6
Repo for running command line-based BLAST in Jupyter environment provided via Binder.
Rnpfind
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6
Bioinformatics tool for exploring RNA-Protein interactions
Thtools
⭐
5
A library for the analysis of toehold switch riboregulators created by the iGEM team City of London UK 2021.
Simplebio.jl
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5
Easy-to-use biological sequence tools working with DNA, RNA and aminoacid sequences.
Dima
⭐
5
A command-line tool that analyses the diversity and motifs of protein/nucleotide sequences.
Peng Motif
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5
PEnG-motif is an open-source software package for searching statistically overrepresented motifs (position specific weight matrices, PWMs) in a set of DNA sequences.
Rnapkin
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5
drawing RNA secondary structure with style; instantly
Rcas
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5
R package for the RNA Centric Annotation System (RCAS)
Cmv
⭐
5
Visualize HMMs, CMs and their comparisons
Thtools
⭐
5
A library for the analysis of toehold switch riboregulators created by the iGEM team City of London UK 2021.
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1-36 of 36 search results
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