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8 search results found

Biowasm ⭐ 165

WebAssembly modules for genomics

Minimap2 Rs ⭐ 46

Rust bindings to minimap2 library

A lightweight library for working with PAF (Pairwise mApping Format) files

Viral genome coverage evaluation for metagenomic diagnostics 🩸

Ruby Minimap2 ⭐ 13

Powerful long read aligner for Ruby

Streamformatics ⭐ 13

Real-time species-typing visualisation for nanopore data.

Genome On Diet ⭐ 11

Genome-on-Diet is a fast and memory-frugal framework for exemplifying sparsified genomics for read mapping, containment search, and metagenomic profiling. It is much faster & more memory-efficient than minimap2 for Illumina, HiFi, and ONT reads. Described by Alser et al. (preliminary version: https://arxiv.org/abs/2211.08157).

Python module to manipulate and visualize minimap2's cs tag

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