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immunology
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17 search results found
Mixcr
⭐
291
MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
Immunarch
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256
🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires
Awesome Vdj
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150
📚 Tools and databases for analyzing HLA and VDJ genes.
Vdjdb Db
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122
🗂️ [vdjdb.cdr3.net is down for maintenance] Git-based TCR database storage & management. Submissions welcome!
Vdjtools
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113
Post-analysis of immune repertoire sequencing data
Migec
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40
A RepSeq processing swiss-knife
Migmap
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38
HTS-compatible wrapper for IgBlast V-(D)-J mapping tool
Antigen.garnish
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35
Epitopepredict
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35
Python package and command line tool for epitope prediction
Sscclust
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32
simpler single cell RNAseq data clustering
Tcr
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31
[DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.
Compairr
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20
Comparison of Adaptive Immune Receptor Repertoires
Vdjviz
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19
A lightweight immune repertoire browser
Immunedb
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19
ImmuneDB - A system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data
Hlabud
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13
🐶 hlabud: HLA genotype analysis in R
Aims
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9
AIMS - Automated Immune Molecule Separator: An analysis pipeline for distinguishing distinct subsets of Ig and MHC molecules. See below site for documentation
Vquest
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5
Automate IMGT V-QUEST usage on imgt.org
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1-17 of 17 search results
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