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13 search results found

The repository for the Machine Learning and Big Data with kdb+/q book by Novotny et al.

Deepchrome ⭐ 41

Bioinformatics16: DeepChrome: Deep-learning for predicting gene expression from histone modifications

Omicselector ⭐ 26

OmicSelector - Environment, docker-based application and R package for biomarker signiture selection (feature selection) & deep learning diagnostic tool development from high-throughput high-throughput omics experiments and other multidimensional datasets. Initially developed for miRNA-seq, RNA-seq and qPCR.

Stackeddae ⭐ 20

Stacked Denoising AutoEncoder based on TensorFlow

A prediction model for differential gene expression (DE) based on genome-wide regulatory interactions

GEDFN: Graph-Embedded Deep Feedforward Network

Coding_excercises ⭐ 19

A public repo for slides and exercise for the "Introduction to deep learning for biologists" Physalia course, by Nelson Nazzicari and Filippo Biscarini

Tensorflow Dnns For Predicting Dna Transcription Factor Binding ⭐ 13

Deep neural networks implemented in TensorFlow & Python for predicting whether transcription factors will bind to given DNA sequences

This is a curated list of tutorials, projects, libraries, videos, papers, books and anything related to applications of Deep Learning to biomedicine. Feel free to make a pull request to contribute to this list.

Convolutional Embedded Networks ⭐ 7

Convolutional Embedded Networks for Population Scale Clustering and Bio-ancestry Inferencing

MAMnet uses a deep learning network to call genetic variants from third generation DNA sequencing data.

Inpactor2 ⭐ 6

Inpactor2: LTR retrotransposon detector and classificator using Deep Learning

Cancertherapy ⭐ 5

To use deep learning to identify patients whose tumor DNA mutations “look similar to” other tumors for which treatments are effective.

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