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Search results for bioinformatics covid 19

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19 search results found

Deeppurpose ⭐ 826

A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)

Serratus ⭐ 219

Ultra-deep search for novel viruses

A package for designing compact and comprehensive capture probe sets.

An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.

Covid19 Event Risk Planner ⭐ 45

COVID19 risk planner R-Shiny application

Covid19kg ⭐ 27

COVID-19 Knowledge Graph: a computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiology

Pathogentrack ⭐ 22

A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.

Covigator Ngs Pipeline ⭐ 15

A Nextflow pipeline for NGS variant calling on SARS-CoV-2. From FASTQ files to normalized and annotated VCF files from GATK, BCFtools, LoFreq and iVar.

Sc2 Illumina Pipeline ⭐ 14

Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub

Sars Cov 2_b.1.1.529_spike Rbd_predictions ⭐ 14

AlphaFold2 and RoseTTAFold predictions of the SARS-CoV-2 B.1.1.529 variant Spike protein with HADDOCK antibody interactions

Drug Sniffer ⭐ 13

Sniffing out new drugs

Srijan Gsoc 2020 ⭐ 12

Healthcare-Researcher-Connector Package: Federated Learning tool for bridging the gap between Healthcare providers and researchers

Covigator ⭐ 11

CoVigator - Monitoring SARS-CoV-2 mutations

BEAR: viral diagnostic analysis pipeline for SARS-CoV-2

Covid 2019 ⭐ 7

Analysis of Coronavirus outbreak data with Pharo

Procedure used fro the surveillance of SARS-CoV-2 genomic variants in wastewater.

Mrna_vaccine_badge ⭐ 7

A small badge showing a schematic of an mRNA vaccine nanoparticle and blinking the RNA sequence of the Moderna or Pfizer vaccines.

CoV-Seq: COVID-19 Genomic Sequence Database and Visualization

Covid Bioinformatics ⭐ 5

Software tools to collect Coronavirus sequences and create protein and nucleotide HMMs

Covid Mvp ⭐ 5

COVID-MVP is an interactive heatmap based visualization tool for SARS-CoV-2. It tracks mutations along with their functional impact and prevalence in Variants of Concern and Interest in near-real time. COVID-MVP is developed in collaboration with nf-ncov-voc https://github.com/cidgoh/nf-ncov-voc as back-end genomics workflow.

Nf Ncov Voc ⭐ 5

A Nextflow wrapped workflow for generating the mutation profiles of SARS-CoV-2 genomes (Variants of Concern and Variants of Interest). Workflow is developed in collaboration with COVID-MVP (https://github.com/cidgoh/COVID-MVP) which can be used to visualize the mutation profiles and functional annotations.

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