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Search results for bioimage analysis
bioimage-analysis
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21 search results found
Qupath
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934
QuPath - Bioimage analysis & digital pathology
Stardist
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788
StarDist - Object Detection with Star-convex Shapes
Pyclesperanto_prototype
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173
GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data
Toad
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94
AI-based pathology predicts origins for cancers of unknown primary - Nature
Python For Bioimage Analysis
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86
This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biological imaging.
Plant Seg
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81
A tool for cell instance aware segmentation in densely packed 3D volumetric images
Awesome Biological Image Analysis
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74
A curated list of software, tools, pipelines, plugins etc. for image analysis related to biological questions.
Sish
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72
Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering
Mastodon
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61
Mastodon – a large-scale tracking and track-editing framework for large, multi-view images.
Deepflash2
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49
A deep-learning pipeline for segmentation of ambiguous microscopic images.
Pi2
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41
C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.
Multitemplatematching Fiji
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34
Fiji plugin for object(s) detection using template(s) matching
Partseg
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28
Tool for segmentation in bioimaging
Imagej_macros_and_scripts
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26
ImageJ macros and scripts written at the imaging facility MRI
Simpli
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24
SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
Tysserand
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22
Fast reconstruction of spatial networks from bioimages.
Magellanmapper
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18
MagellanMapper is a graphical interface for 3D bioimage annotation, atlas registration, and regional quantification
Core Bioimage Io Python
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13
Python libraries for loading, running and packaging bioimage.io models
Pcnadeep
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9
Track single cells and profile the cell cycle with PCNA fluorescence images
Viscy
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6
computer vision models for single-cell phenotyping
Scip
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5
Scalable Cytometry Image Processing (SCIP) is an open-source tool that implements an image processing pipeline on top of Dask, a distributed computing framework written in Python. SCIP performs projection, illumination correction, image segmentation and masking, and feature extraction.
Related Searches
Python Bioimage Analysis (18)
Deep Learning Bioimage Analysis (6)
Imagej Bioimage Analysis (5)
Image Processing Bioimage Analysis (5)
Bioimage Analysis Histology (4)
Napari Bioimage Analysis (4)
Fiji Bioimage Analysis (4)
Segmentation Bioimage Analysis (3)
Biology Bioimage Analysis (3)
Pathology Bioimage Analysis (3)
1-21 of 21 search results
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