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A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments

Copy number calling and variant classification using targeted short read sequencing

Curatedmetagenomicdata ⭐ 109

Curated Metagenomic Data of the Human Microbiome

Dorothea ⭐ 105

R package to access DoRothEA's regulons

BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/packages/BASiCS/ for the official release version

Genetonic ⭐ 74

Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail

Rforproteomics ⭐ 69

Using R and Bioconductor packages for the analysis and comprehension of proteomics data.

A tool for unsupervised projection of single cell RNA-seq data

Multiassayexperiment ⭐ 67

Bioconductor package for management of multi-assay data

Biocparallel ⭐ 61

Bioconductor facilities for parallel evaluation

Mungesumstats ⭐ 59

Rapid standardisation and quality control of GWAS or QTL summary statistics

Singlecellexperiment ⭐ 52

Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/ for the official development version.

Googlegenomics ⭐ 44

An R package for Google Genomics API queries.

Curatedtcgadata ⭐ 38

Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects

Ensembldb ⭐ 33

This is the ensembldb development repository.

Systempipeshiny ⭐ 32

A Shiny framework for workflow management and data visualization

Orthogene ⭐ 31

🧬 o r t h o g e n e 🧬✨✨✨✨✨✨✨ Interspecies gene mapping✨✨✨✨✨ 🦠 🔁 🌱 🔁 🌳 🔁 🍎 🔁 🍊 🔁 🪱 🔁 🪰 🔁 🐟 🔁 🦎 🔁 🐓 🔁 🦇 🔁 🐄 🔁 🐖 🔁 🐐 🔁 🐎 🔁 🐈 🔁 🐕 🔁 🐁 🔁 🐒 🔁 🦧 🔁 🦍 🔁 🏃‍♀️

Cbioportaldata ⭐ 29

Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment

R implementation of the LEfSe method

Rsamtools ⭐ 25

Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import

Rna Seq Tutorial For Gene Differential Expression Analysis ⭐ 24

This tutorial is created for educational purpose

Packagerank ⭐ 24

R Package for Computing and Visualizing CRAN and Bioconductor Downloads

Tcgautils ⭐ 20

Toolbox package for organizing and working with TCGA data

Mspurity ⭐ 15

R-package - Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics

Crisprdesign ⭐ 14

Comprehensive design of CRISPR gRNAs for nucleases and base editors

Package to calculate functional similarity between genes https://biocor.llrs.dev

Gseabenchmarker ⭐ 13

Reproducible GSEA Benchmarking

Genomicsupersignature ⭐ 12

Interpretation of RNAseq experiments through robust, efficient comparison to public databases

piano - An R/Bioconductor package for gene set analysis

Tbsignatureprofiler ⭐ 10

Profile RNA-seq data using published TB gene signatures

Epicompare ⭐ 10

Comparison, benchmarking & QC of epigenetic datasets

HTSlib high-throughput sequencing library as an R package

Hmp16sdata ⭐ 9

16S rRNA Sequencing Data from the Human Microbiome Project

Ontoprocpre2021 ⭐ 9

Ontology processing for Bioconductor

This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.

Biocchallenges ⭐ 9

Challenges for the Biocoductor community.

Cell signatures, with confidence.

Curatedovariandata ⭐ 8

The curatedOvarianData package provides data for gene expression analysis in patients with ovarian cancer

Provides classes for working with sets

Goexpress ⭐ 7

Analysies of gene expression data using Gene Ontology

The deconvR is an R package designed for analyzing deconvolution of the bulk sample(s) using an atlas of reference omic signature profiles and a user-selected model.

Copynumberplots ⭐ 6

R package to create plots representing copy number data using karyoploteR

Characterize A-to-I RNA editing in bulk and single-cell RNA sequencing experiments

Similarpeak ⭐ 6

Bioconductor Package - Metrics to estimate the level of similarity between two ChIP-Seq profiles

Structtoolbox ⭐ 5

R/Bioconductor package - STRUCT (STatistics in R Using Class Templates) Toolbox

Metabolomicsworkbenchr ⭐ 5

R/Bioconductor Package - Interface to the Metabolomics Workbench RESTful API

Cnvranger ⭐ 5

Functionality for CNV analysis

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R Bioconductor Package (51)

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