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Search results for rna seq bioconductor

8 search results found

Bioc Refcard ⭐ 170

Bioconductor cheat sheet

Reference-guided transcript discovery and quantification for long read RNA-Seq data

Tximport ⭐ 128

Transcript quantification import for modular pipelines

Derfinder ⭐ 42

Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches

R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/

Interactive Differential Expression AnaLysis - DE made accessible and reproducible

Recount3 ⭐ 24

Explore and download data from the recount3 project

Fishpond ⭐ 23

Differential expression and allelic analysis, nonparametric statistics

Modeling and correcting fragment sequence bias for RNA-seq

Degreport ⭐ 21

Create a cromphensive report of DEG list coming from any analysis of RNAseq data

Cd4 Csaw ⭐ 15

Reproducible reanalysis of a combined ChIP-Seq & RNA-Seq data set

Recount Website ⭐ 12

Code for the Recount project

Regionreport ⭐ 9

Generate HTML report for a set of genomic regions or DESeq2/edgeR results

Access data from the Human Cell Atlas project, directly via R/Bioconductor

Fluentgenomics ⭐ 7

plyranges and tximeta case study

Recount Contributions ⭐ 5

Contribute your human Illumina RNA-seq data to recount2

Some of the analytical processes and tools we use to provide rigorous and actionable results to our clients.

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