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Search results for bash pipeline
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pipeline
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37 search results found
Gitlab Ci Local
⭐
1,656
Tired of pushing to test your .gitlab-ci.yml?
Mario
⭐
487
Powerful Python pipelines for your shell
Mkdkr
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241
Make + Docker + Shell = CI Pipeline
Pipelight
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211
Tiny automation pipelines. Bring CI/CD to the smallest projects. Self-hosted, Lightweight, CLI only.
Flambe
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204
An ML framework to accelerate research and its path to production.
Bash Streams Handbook
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148
💻 Learn Bash streams, pipelines and redirection, from beginner to advanced.
Onhold
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145
🔊 Play sounds while and after shell jobs complete
Pipelines
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110
Build pipelines for automation, deployment, testing...
Ilus
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89
A handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysis. 一个简易且全面的 WGS/WES 分析流程生成器.
Lines
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71
A pure bash clojureish CI pipeline
Unity Build Pipeline
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63
Custom BASH script for build, archive, export and upload APK and IPA to server with Telegram notification
Ddocent
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46
a bash pipeline for RAD sequencing
Get_phylomarkers
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39
A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concatenation approaches
Pylada Light
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36
A physics computational framework for python and ipython
Pipeline
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29
Spline is a tool that is capable of running locally as well as part of well known pipelines like Jenkins (Jenkinsfile), Travis CI (.travis.yml) or similar ones.
Newbies Guide For Td
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29
learning and glossary for nuke pipeline dev
Provenance
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26
Provenance and caching library for python functions, built for creating lightweight machine learning pipelines
Atacseq_pipeline
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25
Ultimate ATAC-seq Data Processing & Quantification Workflow. A Snakemake implementation of the BSF's ATAC-seq Data Processing Pipeline extended by downstream quantification and annotation steps using bash and Python.
Minishell
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23
Creating your own shell
Bash Example
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22
An example repository you can use as a test project with Buildkite
K3ai Core
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21
K3ai-core is the core library for the GO installer. Go installer will replace the current bash installer
Pman
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19
A process management system written in python
Spew
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19
Automatic Packaging and Distribution of Bioinformatics Pipelines
Rnaseq Pipeline
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18
RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
Swiftybash
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17
Bash scripting & piping in Swift made easy !
Nemesyst
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14
Generalised and highly customisable, hybrid-parallelism, database based, deep learning framework.
Bash Libraries
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13
A set of useful Bash libraries
Jqmd
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13
Write and document your jq/shell scripts with markdown
Pypyr Example
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12
pypyr pipeline runner cli examples
Sdc Api Tool
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12
A set of utilities to help with management of Streamsets pipelines.
Vlbi_pipeline
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12
Generic CASA-based VLBI pipeline for use on job clusters
Jobseeker
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10
If you are looking for a tool which can provide you an unified platform with task job scheduler (Talend, Windows Batch Scripts, Linux Bash Scripts, Python Scripts, Spark Jobs, etc) and also a system which has a logging platform for querying your build status, get customized notifications on email, different user roles permissions, file management and more, this tool was designed for you !
Instance_stixels
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10
Implementation of the Instance Stixel pipeline. Paper:
Pfcon
⭐
10
Data / Compute manager
Gocdapi
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10
A Python API for accessing resources and configuring Go (thoughtworks) continuous-delivery servers
Helm Charts
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9
Helm Charts for Riff
Flowbio
⭐
9
A fast, easy way to present complex bioinformatics pipelines to biologists
Poap
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8
Parallelized Open Babel & Autodock suite Pipeline
Ngs_mapper
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7
Genome Mapping Pipeline
Tutorials Pipelines
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6
Tekton CD Pipeline Demos
Pdfocr Redux
⭐
6
A bash script for creating searchable pdf
Quarkus Pipeline Demo
⭐
6
Kubernetes and Knative pipeline demo using Tekton
Fluteline
⭐
6
Easy thread based pipelines
Phpqa
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6
A PHP Quality Assurance pipeline designed to be run locally and in CI. Written in Bash.
Command Line Fundamentals
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6
Learn to use the Unix command-line tools and Bash shell scripting
Mini Pipelines
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5
collection of scripts that chain together other scripts by preparing and processing/transforming data.
Mykrobe_tb_workflow
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5
A workflow for analysis and resistance profiling of Mycobacterium tuberculosis nanopore data with Mykrobe
Cobasi
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5
Gen3_workflow
⭐
5
Development code for a Gen3-based DRP pipeline implementation
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1-37 of 37 search results
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