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Search results for atom editor protein
atom-editor
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protein
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Sidechainnet
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256
An all-atom protein structure dataset for machine learning.
Pv
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233
WebGL protein viewer
Torchproteinlibrary
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107
PyTorch library of layers acting on protein representations
Beautiful Atoms
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102
Python module for drawing and rendering beautiful atoms and molecules using Blender.
Atomium
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92
Python macromolecular parsing (with .pdb/.cif/.mmtf parsing and production)
Pdbtools
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68
A set of tools for manipulating and doing calculations on wwPDB macromolecule structure files
Pdb Benchmarks
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26
Benchmarking common tasks on proteins in various languages and packages
Onionnet
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24
A multiple-layer inter-molecular contact features based deep neural network for protein-ligand binding affinity prediction
Pdbcolor
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24
Python code to color a PDB structure based on parameters from a multiple sequence alignment
Alphaspace2
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16
Protein surface topographical mapping tool
Cspred
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12
UCBShift is a program for predicting chemical shifts for backbone atoms and β-carbon of a protein in solution. It utilizes a machine learning module that makes predictions from features extracted from the 3D structures of the proteins.
Sars Cov 2 Public
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11
Bondpack
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10
A collection of PyMOL plugins to visualize atomic bonds.
Mastic
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8
Multi-Atom Structure/Selection Toolkit with Interaction Capabilities
Protein Folding
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8
Protein structure prediction using optimization methods from the field of machine learning
Protac_ternary
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8
Ponder
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8
PointNet for Deep Rank: protein-protein interaction scoring using neural networks
Haskell Pdb Utilities
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7
A collection of modules for dealing with Protein Data Bank files
Structureanalyzer
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6
A program analyzing 3D protein structures from PDB to generate 2D binding motifs
Pdbtools
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5
Collection of modules for PDB file parsing, linear algebra calculations and structure modify.
Ppiprediction
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5
software used in the paper "Exploring the potential of 3D Zernike descriptors and SVM for protein–protein interface prediction"
Pointsite
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5
PointSite: a point cloud segmentation tool for identification of protein ligand binding atoms
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